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Sample GSM181269 Query DataSets for GSM181269
Status Public on Apr 11, 2007
Title cy3:SHR treated w/ nifedipine, biological rep 3g; cy5:pool of 6 WKY control rats
Sample type RNA
 
Channel 1
Source name medial layer of thorassic and abdominal aorta from pool of 6 WKY control rats
Organism Rattus norvegicus
Characteristics mean systolic blood pressure = 107+/-8 mm HG
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy kit
Label Cy5
Label protocol fluorescent linear amplification kit from Agilent
 
Channel 2
Source name medial layer of thorassic and abdominal aorta from SHR rat treated w/ nifedipine
Organism Rattus norvegicus
Characteristics mean systolic blood pressure = 145+/-9 mm HG
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy kit
Label Cy3
Label protocol fluorescent linear amplification kit from Agilent
 
 
Hybridization protocol 60 C for 17 hours
Scan protocol Agilent DNA Microarray scanner
Description na
Data processing images analyzed with Agilent Feature Extraction v7.1,
 
Submission date Apr 09, 2007
Last update date Apr 10, 2007
Contact name Lynn M Amon
E-mail(s) lynn.amon@cidresearch.org
Organization name Fred Hutchinson Cancer Research Center
Department Division of Public Health Sciences
Lab Computation Biology Program
Street address 1100 Fairview, M1-C108
City Seattle
State/province WA
ZIP/Postal code 98109-1024
Country USA
 
Platform ID GPL890
Series (1)
GSE7483 Microarray analysis of aortic tissue from different rat hypertensive models

Data table header descriptions
ID_REF Agilent Feature Extraction feature number
VALUE -(log2((R-Rb)/(G-Gb)) Loess normalized in LIMMA and scaled normalized across arrays excl SHR_wash
R rMeanSignal
G gMeanSignal
Rb rBGMedianSignal
Gb gBGMedianSignal
FLAGGED feature or background signal was nonuniform or outlier flagged and removed
INV_VALUE log2((R-Rb)/(G-Gb)) Loess normalized in LIMMA and scaled normalized across arrays excl SHR_wash

Data table
ID_REF VALUE R G Rb Gb FLAGGED INV_VALUE
1 3.22094 111.7333 687.4167 60 61 1 -3.220940927
2 0.529933 66.96774 88.03226 59 61 1 -0.529933418
3 0.0577603 97.78947 106.193 58 60 1 -0.057760334
4 0.305648 113.4464 128.7679 59 61 1 -0.305647841
5 0.151929 110.7018 120.4561 59 62 1 -0.151928706
6 0.15129 107.8254 118.5238 60 63 1 -0.151289853
7 4.40996 74.70968 692.6774 59 65 0 -4.409957933
8 -0.130202 118.1053 114.8947 59 63 1 0.130201836
9 -0.00476292 74.72414 89.72414 59 63 1 0.004762922
10 -0.0703645 304.8065 221.0968 58 62 1 0.070364506
11 0.171111 89.88136 105.8814 58 62 1 -0.171111322
24 0.19275 73.28571 95.55556 58.5 66 0 -0.192750482
25 -0.291483 996.0175 484.8596 58 67 0 0.291483105
26 0.141508 86.86207 108.8448 59 69 0 -0.14150793
27 -0.0284041 129.7541 133.541 60 71 0 0.02840406
28 4.58614 78.28814 829.0339 61.5 72 0 -4.586139669
29 0.00979324 338.5088 258.8596 60 71 0 -0.009793235
30 0.365099 88.10526 116.614 58 68 0 -0.365098542
31 0.0255954 129.4643 134.2857 61 70 0 -0.025595418
32 0.0867578 73 97.78947 60 72 0 -0.086757789

Total number of rows: 21544

Table truncated, full table size 1117 Kbytes.




Supplementary file Size Download File type/resource
GSM181269.txt.gz 5.0 Mb (ftp)(http) TXT

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