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Sample GSM181277 Query DataSets for GSM181277
Status Public on Apr 11, 2007
Title cy3:WKY treated w/ angtiotensin, biological rep 1g; cy5:pool of 6 WKY control rats
Sample type RNA
 
Channel 1
Source name medial layer of thorassic and abdominal aorta from pool of 6 WKY control rats
Organism Rattus norvegicus
Characteristics mean systolic blood pressure = 107+/-8 mm HG
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy kit
Label Cy5
Label protocol fluorescent linear amplification kit from Agilent
 
Channel 2
Source name medial layer of thorassic and abdominal aorta from WKY rat treated w/ angiotensin
Organism Rattus norvegicus
Characteristics mean systolic blood pressure = 188+/-12 mm HG
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy kit
Label Cy3
Label protocol fluorescent linear amplification kit from Agilent
 
 
Hybridization protocol 60 C for 17 hours
Scan protocol Agilent DNA Microarray scanner
Description na
Data processing images analyzed with Agilent Feature Extraction v7.1,
 
Submission date Apr 09, 2007
Last update date Apr 10, 2007
Contact name Lynn M Amon
E-mail(s) lynn.amon@cidresearch.org
Organization name Fred Hutchinson Cancer Research Center
Department Division of Public Health Sciences
Lab Computation Biology Program
Street address 1100 Fairview, M1-C108
City Seattle
State/province WA
ZIP/Postal code 98109-1024
Country USA
 
Platform ID GPL890
Series (1)
GSE7483 Microarray analysis of aortic tissue from different rat hypertensive models

Data table header descriptions
ID_REF Agilent Feature Extraction feature number
VALUE -(log2((R-Rb)/(G-Gb)) Loess normalized in LIMMA and scaled normalized across arrays excl SHR_wash
R rMeanSignal
G gMeanSignal
Rb rBGMedianSignal
Gb gBGMedianSignal
FLAGGED feature or background signal was nonuniform or outlier flagged and removed
INV_VALUE log2((R-Rb)/(G-Gb)) Loess normalized in LIMMA and scaled normalized across arrays excl SHR_wash

Data table
ID_REF VALUE R G Rb Gb FLAGGED INV_VALUE
1 2.67311 200.6167 628.45 57 48 0 -2.673108698
2 0.298193 97.28814 128.0339 57 45 1 -0.298193148
3 -0.348173 100 113.3793 57 47 0 0.348173377
4 0.00622179 112.1864 134.7288 57 47 0 -0.006221786
5 -0.213524 104.8136 121.1186 57 47 0 0.213524243
6 0.137647 117.6034 145.8448 56 47 0 -0.137646813
7 5.30774 89.01923 665.3846 56 48 0 -5.307744871
8 -0.18909 135.8727 148.2909 57 48 0 0.18908974
9 -0.305008 84.43103 100.1724 57 47 0 0.305007881
10 -0.117027 221.5614 220.0877 56 47 0 0.117027006
11 -0.157539 102.9677 122.0806 56 47 0 0.157539284
24 -0.218329 90.05085 109.8814 56 48 0 0.218329411
25 0.187079 580.9153 595.1356 56 48 0 -0.187078651
26 0.0283858 93.41071 119.1964 55.5 47 0 -0.028385828
27 -0.29416 182.1071 179.375 55 48 0 0.294159512
28 5.47155 91.83333 754.9667 56 48 0 -5.471551077
29 0.0506647 404.9821 396.8929 56 47 0 -0.050664749
30 0.150165 98.68333 128.7167 55 47 1 -0.15016459
31 -0.374474 140.8983 145.7966 55 48 0 0.374474253
32 -0.298958 79.37288 95.83051 56 47 0 0.298957582

Total number of rows: 21544

Table truncated, full table size 1117 Kbytes.




Supplementary file Size Download File type/resource
GSM181277.txt.gz 5.0 Mb (ftp)(http) TXT

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