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Sample GSM181285 Query DataSets for GSM181285
Status Public on Apr 11, 2007
Title cy3:WKY treated w/ angtiotensin, biological rep 5g; cy5:pool of 6 WKY control rats
Sample type RNA
 
Channel 1
Source name medial layer of thorassic and abdominal aorta from pool of 6 WKY control rats
Organism Rattus norvegicus
Characteristics mean systolic blood pressure = 107+/-8 mm HG
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy kit
Label Cy5
Label protocol fluorescent linear amplification kit from Agilent
 
Channel 2
Source name medial layer of thorassic and abdominal aorta from WKY rat treated w/ angiotensin
Organism Rattus norvegicus
Characteristics mean systolic blood pressure = 188+/-12 mm HG
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy kit
Label Cy3
Label protocol fluorescent linear amplification kit from Agilent
 
 
Hybridization protocol 60 C for 17 hours
Scan protocol Agilent DNA Microarray scanner
Description na
Data processing images analyzed with Agilent Feature Extraction v7.1,
 
Submission date Apr 09, 2007
Last update date Apr 10, 2007
Contact name Lynn M Amon
E-mail(s) lynn.amon@cidresearch.org
Organization name Fred Hutchinson Cancer Research Center
Department Division of Public Health Sciences
Lab Computation Biology Program
Street address 1100 Fairview, M1-C108
City Seattle
State/province WA
ZIP/Postal code 98109-1024
Country USA
 
Platform ID GPL890
Series (1)
GSE7483 Microarray analysis of aortic tissue from different rat hypertensive models

Data table header descriptions
ID_REF Agilent Feature Extraction feature number
VALUE -(log2((R-Rb)/(G-Gb)) Loess normalized in LIMMA and scaled normalized across arrays excl SHR_wash
R rMeanSignal
G gMeanSignal
Rb rBGMedianSignal
Gb gBGMedianSignal
FLAGGED feature or background signal was nonuniform or outlier flagged and removed
INV_VALUE log2((R-Rb)/(G-Gb)) Loess normalized in LIMMA and scaled normalized across arrays excl SHR_wash

Data table
ID_REF VALUE R G Rb Gb FLAGGED INV_VALUE
1 3.8504 112.8571 582.6071 61 57 0 -3.850398449
2 -0.126982 81.21311 103.4918 61 57 1 0.12698198
3 -0.347278 98.14754 116.8689 62 57 0 0.347278121
4 -0.197724 113.2 138.2333 60 58 0 0.197724495
5 -0.315746 103.3443 123.7213 62 58 0 0.315746162
6 -0.207812 122.4444 144.2963 62 58 0 0.207811686
7 4.68191 91.40351 566.5263 63 61 0 -4.681906516
8 -0.512393 146.6964 152.8571 62 60 0 0.512393197
9 -0.516991 94.07273 110.6909 63 60 0 0.516990783
10 -0.122105 320.7288 320.4068 63 61 0 0.122104733
11 -0.242299 132.0678 155.2712 63 63 0 0.242299422
24 -0.473673 97.60714 120.0179 61 63 0 0.473673165
25 0.0723322 961.871 978.4677 63 64 0 -0.072332227
26 -0.0665517 108.614 142.6842 62 64 0 0.066551694
27 -0.257689 146.7667 169.7167 63 66 0 0.257688674
28 4.8819 92 630.1864 63 66 0 -4.881903422
29 -0.014373 464.1475 472.0328 63 65 0 0.014372967
30 -0.0626943 118.3509 152.2632 62 64 0 0.062694275
31 -0.378527 134.5574 153.6721 63 65 0 0.378527377
32 -0.442627 93.87037 117.2037 63 65 0 0.44262699

Total number of rows: 21544

Table truncated, full table size 1118 Kbytes.




Supplementary file Size Download File type/resource
GSM181285.txt.gz 5.0 Mb (ftp)(http) TXT

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