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Sample GSM181287 Query DataSets for GSM181287
Status Public on Apr 11, 2007
Title cy3:WKY treated w/ angtiotensin, biological rep 6g; cy5:pool of 6 WKY control rats
Sample type RNA
 
Channel 1
Source name medial layer of thorassic and abdominal aorta from pool of 6 WKY control rats
Organism Rattus norvegicus
Characteristics mean systolic blood pressure = 107+/-8 mm HG
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy kit
Label Cy5
Label protocol fluorescent linear amplification kit from Agilent
 
Channel 2
Source name medial layer of thorassic and abdominal aorta from WKY rat treated w/ angiotensin
Organism Rattus norvegicus
Characteristics mean systolic blood pressure = 188+/-12 mm HG
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy kit
Label Cy3
Label protocol fluorescent linear amplification kit from Agilent
 
 
Hybridization protocol 60 C for 17 hours
Scan protocol Agilent DNA Microarray scanner
Description na
Data processing images analyzed with Agilent Feature Extraction v7.1,
 
Submission date Apr 09, 2007
Last update date Apr 10, 2007
Contact name Lynn M Amon
E-mail(s) lynn.amon@cidresearch.org
Organization name Fred Hutchinson Cancer Research Center
Department Division of Public Health Sciences
Lab Computation Biology Program
Street address 1100 Fairview, M1-C108
City Seattle
State/province WA
ZIP/Postal code 98109-1024
Country USA
 
Platform ID GPL890
Series (1)
GSE7483 Microarray analysis of aortic tissue from different rat hypertensive models

Data table header descriptions
ID_REF Agilent Feature Extraction feature number
VALUE -(log2((R-Rb)/(G-Gb)) Loess normalized in LIMMA and scaled normalized across arrays excl SHR_wash
R rMeanSignal
G gMeanSignal
Rb rBGMedianSignal
Gb gBGMedianSignal
FLAGGED feature or background signal was nonuniform or outlier flagged and removed
INV_VALUE log2((R-Rb)/(G-Gb)) Loess normalized in LIMMA and scaled normalized across arrays excl SHR_wash

Data table
ID_REF VALUE R G Rb Gb FLAGGED INV_VALUE
1 4.0172 154.1091 635.8 57 50 0 -4.017202328
2 0.201004 76.53333 106.0667 59 50 0 -0.20100376
3 -0.442707 118.5862 136.3793 57 50 0 0.442707368
4 0.220002 136.4839 174.4032 58 49 0 -0.220002383
5 -0.203561 118.5806 142.629 58 50 0 0.203560712
6 -0.0597777 133.7288 161.3051 58 50 0 0.059777726
7 5.20212 107.1475 593.4426 57 51 0 -5.202117255
8 -0.174009 166.9821 186.0179 58 50 0 0.174009361
9 -0.423201 89.36066 112.1639 57 50 0 0.423200851
10 -0.155521 304.1034 304.7069 58 50 0 0.155521417
11 -0.0522409 127 155.322 58 50 0 0.052240861
24 -0.0112321 82.76364 112.5636 58 50.5 0 0.01123211
25 0.0497523 858.5 834 58 51 0 -0.049752335
26 -0.00536006 98.42857 131.1607 57 51 0 0.005360063
27 -0.106432 178.9286 202.1429 57 51.5 0 0.106432185
28 5.75825 101.7368 661.9123 57 51 0 -5.758246183
29 0.0586258 480.6379 491.9655 56 50 0 -0.058625756
30 0.221155 112.2 152.1167 56 50 0 -0.221154517
31 -0.0832742 159.0943 184.3396 57 50 0 0.083274216
32 -0.144881 82.92982 110.7193 58 51 0 0.144881146

Total number of rows: 21544

Table truncated, full table size 1118 Kbytes.




Supplementary file Size Download File type/resource
GSM181287.txt.gz 5.0 Mb (ftp)(http) TXT

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