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Sample GSM181289 Query DataSets for GSM181289
Status Public on Apr 11, 2007
Title cy5:WKY control, biological rep 1r; cy3:pool of 6 WKY control rats
Sample type RNA
 
Channel 1
Source name medial layer of thorassic and abdominal aorta from untreated WKY rat
Organism Rattus norvegicus
Characteristics mean systolic blood pressure = 107+/-8 mm HG
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy kit
Label Cy5
Label protocol fluorescent linear amplification kit from Agilent
 
Channel 2
Source name medial layer of thorassic and abdominal aorta from pool of 6 WKY control rats
Organism Rattus norvegicus
Characteristics mean systolic blood pressure = 107+/-8 mm HG
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy kit
Label Cy3
Label protocol fluorescent linear amplification kit from Agilent
 
 
Hybridization protocol 60 C for 17 hours
Scan protocol Agilent DNA Microarray scanner
Description na
Data processing images analyzed with Agilent Feature Extraction v7.1,
 
Submission date Apr 09, 2007
Last update date Apr 10, 2007
Contact name Lynn M Amon
E-mail(s) lynn.amon@cidresearch.org
Organization name Fred Hutchinson Cancer Research Center
Department Division of Public Health Sciences
Lab Computation Biology Program
Street address 1100 Fairview, M1-C108
City Seattle
State/province WA
ZIP/Postal code 98109-1024
Country USA
 
Platform ID GPL890
Series (1)
GSE7483 Microarray analysis of aortic tissue from different rat hypertensive models

Data table header descriptions
ID_REF Agilent Feature Extraction feature number
VALUE log2((R-Rb)/(G-Gb)) Loess normalized in LIMMA and scaled normalized across arrays excl SHR_wash
R rMeanSignal
G gMeanSignal
Rb rBGMedianSignal
Gb gBGMedianSignal
FLAGGED feature or background signal was nonuniform or outlier flagged and removed

Data table
ID_REF VALUE R G Rb Gb FLAGGED
1 -2.205020464 323.8667 790.7667 60 50 1
2 -0.046976219 73.09615 98 59 48 1
3 -0.339107092 522.3704 545.963 60 49 1
4 -0.884618013 318.4667 439.0667 59 49 1
5 -1.444983995 1386.383 2317.55 64 51 1
6 -0.697383836 625.6226 755.9811 63 51 1
7 -5.795536157 84.69231 674.7308 58 50 0
8 -0.72810613 845.8947 1023.491 58 48 1
9 0.102177225 72.09259 96.37037 58 49 0
10 -0.84146002 495.1754 652.1754 58 50 1
11 0.363076325 94.49123 113.8246 58 49 0
24 -0.035235312 915.5738 801.1803 56.5 49 1
25 -0.249316961 539.619 543.4286 56 48 1
26 -0.007077526 83.67857 113.6964 56 48 1
27 -0.0508309 191.5556 208.6852 56 47 1
28 -5.82793373 85.83333 746.1852 55 47 1
29 -0.158705213 324.0862 332.569 56 47 1
30 -0.283533237 89.20635 125.9365 56 47 1
31 0.475228631 111.8197 123.0492 55 46 1
32 0.13136496 67.64286 90.78571 55 46 1

Total number of rows: 21544

Table truncated, full table size 912 Kbytes.




Supplementary file Size Download File type/resource
GSM181289.txt.gz 5.0 Mb (ftp)(http) TXT

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