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Sample GSM181291 Query DataSets for GSM181291
Status Public on Apr 11, 2007
Title cy3:WKY control, biological rep 2g; cy5:pool of 6 WKY control rats
Sample type RNA
 
Channel 1
Source name medial layer of thorassic and abdominal aorta from pool of 6 WKY control rats
Organism Rattus norvegicus
Characteristics mean systolic blood pressure = 107+/-8 mm HG
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy kit
Label Cy5
Label protocol fluorescent linear amplification kit from Agilent
 
Channel 2
Source name medial layer of thorassic and abdominal aorta from untreated WKY rat
Organism Rattus norvegicus
Characteristics mean systolic blood pressure = 107+/-8 mm HG
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy kit
Label Cy3
Label protocol fluorescent linear amplification kit from Agilent
 
 
Hybridization protocol 60 C for 17 hours
Scan protocol Agilent DNA Microarray scanner
Description na
Data processing images analyzed with Agilent Feature Extraction v7.1,
 
Submission date Apr 09, 2007
Last update date Apr 10, 2007
Contact name Lynn M Amon
E-mail(s) lynn.amon@cidresearch.org
Organization name Fred Hutchinson Cancer Research Center
Department Division of Public Health Sciences
Lab Computation Biology Program
Street address 1100 Fairview, M1-C108
City Seattle
State/province WA
ZIP/Postal code 98109-1024
Country USA
 
Platform ID GPL890
Series (1)
GSE7483 Microarray analysis of aortic tissue from different rat hypertensive models

Data table header descriptions
ID_REF Agilent Feature Extraction feature number
VALUE -(log2((R-Rb)/(G-Gb)) Loess normalized in LIMMA and scaled normalized across arrays excl SHR_wash
R rMeanSignal
G gMeanSignal
Rb rBGMedianSignal
Gb gBGMedianSignal
FLAGGED feature or background signal was nonuniform or outlier flagged and removed
INV_VALUE log2((R-Rb)/(G-Gb)) Loess normalized in LIMMA and scaled normalized across arrays excl SHR_wash

Data table
ID_REF VALUE R G Rb Gb FLAGGED INV_VALUE
1 4.12024 168.1379 644.6379 61 56 0 -4.120243903
2 0.639151 73.83051 115.2034 60 56 0 -0.639151351
3 0.107909 87.2069 119.1724 60 55 0 -0.107908711
4 0.71273 100.8947 145.6842 60 54 0 -0.712729882
5 0.485566 92.31579 132.2632 60 55 0 -0.48556624
6 0.566991 108.5167 149.3167 60 55 0 -0.566991413
7 5.31859 103.9825 552.5088 60 56 1 -5.318589289
8 -0.206444 119.5714 134.2679 61 55 0 0.206443995
9 0.19388 79.38182 112.0909 61 55 0 -0.19387974
10 0.333856 237.8947 240.614 60 54 0 -0.333855617
11 0.274433 103.2712 136.0847 59 54 0 -0.274432813
24 -0.0205738 117.8983 139.5932 62 57 0 0.020573797
25 0.0166428 654.8276 490.7414 61 56 0 -0.016642847
26 -0.0109747 117.9286 140.2679 60 56 0 0.01097469
27 -0.126416 188.6207 181.6207 61.5 57 0 0.126416467
28 6.67249 89.64912 713.9649 59 57 0 -6.672489662
29 -0.0761256 368.2364 296.0364 61 57 0 0.076125608
30 0.379389 119.7627 153.8305 60 56 0 -0.379388804
31 -0.0181376 118.5263 140.4737 60 56 0 0.018137645
32 -0.236205 114.0877 130.0351 61 55 0 0.236204548

Total number of rows: 21544

Table truncated, full table size 1118 Kbytes.




Supplementary file Size Download File type/resource
GSM181291.txt.gz 5.0 Mb (ftp)(http) TXT

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