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Sample GSM181292 Query DataSets for GSM181292
Status Public on Apr 11, 2007
Title cy5:WKY control, biological rep 2r; cy3:pool of 6 WKY control rats
Sample type RNA
 
Channel 1
Source name medial layer of thorassic and abdominal aorta from untreated WKY rat
Organism Rattus norvegicus
Characteristics mean systolic blood pressure = 107+/-8 mm HG
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy kit
Label Cy5
Label protocol fluorescent linear amplification kit from Agilent
 
Channel 2
Source name medial layer of thorassic and abdominal aorta from pool of 6 WKY control rats
Organism Rattus norvegicus
Characteristics mean systolic blood pressure = 107+/-8 mm HG
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy kit
Label Cy3
Label protocol fluorescent linear amplification kit from Agilent
 
 
Hybridization protocol 60 C for 17 hours
Scan protocol Agilent DNA Microarray scanner
Description na
Data processing images analyzed with Agilent Feature Extraction v7.1,
 
Submission date Apr 09, 2007
Last update date Apr 10, 2007
Contact name Lynn M Amon
E-mail(s) lynn.amon@cidresearch.org
Organization name Fred Hutchinson Cancer Research Center
Department Division of Public Health Sciences
Lab Computation Biology Program
Street address 1100 Fairview, M1-C108
City Seattle
State/province WA
ZIP/Postal code 98109-1024
Country USA
 
Platform ID GPL890
Series (1)
GSE7483 Microarray analysis of aortic tissue from different rat hypertensive models

Data table header descriptions
ID_REF Agilent Feature Extraction feature number
VALUE log2((R-Rb)/(G-Gb)) Loess normalized in LIMMA and scaled normalized across arrays excl SHR_wash
R rMeanSignal
G gMeanSignal
Rb rBGMedianSignal
Gb gBGMedianSignal
FLAGGED feature or background signal was nonuniform or outlier flagged and removed

Data table
ID_REF VALUE R G Rb Gb FLAGGED
1 -3.629749342 160.4561 611.2982 60 53 0
2 -0.487200752 77.75 102.4333 61 51 0
3 0.07275136 110.5968 124.871 60 51 0
4 -0.46659549 116.4364 148.0364 60 51 0
5 -0.048067134 113.807 130.2632 61 51 0
6 -0.273111383 129.2982 150.9649 61 50 0
7 -5.365362157 99.53226 614.629 61 54 1
8 -0.119305833 138.2586 153.4138 60 50 0
9 -0.025046574 88.45763 107.7458 60 51 0
10 -0.415543167 211.807 237.7018 60 51 0
11 -0.12141883 117.1429 135.5 61 51 0
24 0.121690393 103.4464 116.9107 61 51 0
25 -0.382408148 528.6786 536.3214 61 51 0
26 -0.36371689 104.125 131.8929 61 52 0
27 -0.036919678 205.6545 204.4545 60 51 0
28 -5.513634609 100.8448 660.2241 61.5 53 1
29 -0.038108898 416.7627 374.8814 61 53 0
30 -0.266379329 114.4915 139.8644 60 52 0
31 -0.022180406 149.9344 159.7541 60 51 0
32 -0.056250536 87.18519 106.037 61 51 0

Total number of rows: 21544

Table truncated, full table size 913 Kbytes.




Supplementary file Size Download File type/resource
GSM181292.txt.gz 5.0 Mb (ftp)(http) TXT

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