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Sample GSM181293 Query DataSets for GSM181293
Status Public on Apr 11, 2007
Title cy3:WKY control, biological rep 3g; cy5:pool of 6 WKY control rats
Sample type RNA
 
Channel 1
Source name medial layer of thorassic and abdominal aorta from pool of 6 WKY control rats
Organism Rattus norvegicus
Characteristics mean systolic blood pressure = 107+/-8 mm HG
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy kit
Label Cy5
Label protocol fluorescent linear amplification kit from Agilent
 
Channel 2
Source name medial layer of thorassic and abdominal aorta from untreated WKY rat
Organism Rattus norvegicus
Characteristics mean systolic blood pressure = 107+/-8 mm HG
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy kit
Label Cy3
Label protocol fluorescent linear amplification kit from Agilent
 
 
Hybridization protocol 60 C for 17 hours
Scan protocol Agilent DNA Microarray scanner
Description na
Data processing images analyzed with Agilent Feature Extraction v7.1,
 
Submission date Apr 09, 2007
Last update date Apr 10, 2007
Contact name Lynn M Amon
E-mail(s) lynn.amon@cidresearch.org
Organization name Fred Hutchinson Cancer Research Center
Department Division of Public Health Sciences
Lab Computation Biology Program
Street address 1100 Fairview, M1-C108
City Seattle
State/province WA
ZIP/Postal code 98109-1024
Country USA
 
Platform ID GPL890
Series (1)
GSE7483 Microarray analysis of aortic tissue from different rat hypertensive models

Data table header descriptions
ID_REF Agilent Feature Extraction feature number
VALUE -(log2((R-Rb)/(G-Gb)) Loess normalized in LIMMA and scaled normalized across arrays excl SHR_wash
R rMeanSignal
G gMeanSignal
Rb rBGMedianSignal
Gb gBGMedianSignal
FLAGGED feature or background signal was nonuniform or outlier flagged and removed
INV_VALUE log2((R-Rb)/(G-Gb)) Loess normalized in LIMMA and scaled normalized across arrays excl SHR_wash

Data table
ID_REF VALUE R G Rb Gb FLAGGED INV_VALUE
1 4.57775 203.75 706.0313 69 64 0 -4.577748826
2 1.06879 100.9444 170.9444 66 63 1 -1.068790126
3 0.322547 165.2931 210.7414 68 65 0 -0.322546858
4 0.454564 168.0545 219.4182 66 64 0 -0.454564495
5 0.116857 153.5179 194.1786 67 65 0 -0.116857202
6 0.345246 176.8909 222.2 65 63 0 -0.345246044
7 6.64408 119.2333 662.9167 67 63 0 -6.644081394
8 -0.268088 193.2 209.3333 68 66 0 0.268088486
9 -0.211767 114.4727 155.2182 67 66 0 0.211767483
10 0.205155 360.7273 366.5636 68 67 0 -0.205155362
11 0.197199 147.7627 193.4576 68 67 0 -0.197198637
24 -0.0893642 135.3704 178.9444 69 72 0 0.089364243
25 0.393879 1008.172 968.9655 70 72 0 -0.393878513
26 0.345966 136.9808 193.25 69 72 0 -0.345965591
27 -0.0661499 303.7966 303.1017 69 71 0 0.066149945
28 6.61821 131.5 746.7333 69 73 0 -6.618210956
29 -0.1311 583.0182 503.6545 71 73 0 0.131100304
30 0.255399 155.0484 205.871 70 73 0 -0.255399442
31 -0.205752 220.3793 237.069 70 73.5 0 0.205752033
32 -0.0894317 107.1754 156.3684 68.5 72 0 0.089431661

Total number of rows: 21544

Table truncated, full table size 1119 Kbytes.




Supplementary file Size Download File type/resource
GSM181293.txt.gz 5.0 Mb (ftp)(http) TXT

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