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Sample GSM181295 Query DataSets for GSM181295
Status Public on Apr 11, 2007
Title cy3:WKY control, biological rep 4g; cy5:pool of 6 WKY control rats
Sample type RNA
 
Channel 1
Source name medial layer of thorassic and abdominal aorta from pool of 6 WKY control rats
Organism Rattus norvegicus
Characteristics mean systolic blood pressure = 107+/-8 mm HG
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy kit
Label Cy5
Label protocol fluorescent linear amplification kit from Agilent
 
Channel 2
Source name medial layer of thorassic and abdominal aorta from untreated WKY rat
Organism Rattus norvegicus
Characteristics mean systolic blood pressure = 107+/-8 mm HG
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy kit
Label Cy3
Label protocol fluorescent linear amplification kit from Agilent
 
 
Hybridization protocol 60 C for 17 hours
Scan protocol Agilent DNA Microarray scanner
Description na
Data processing images analyzed with Agilent Feature Extraction v7.1,
 
Submission date Apr 09, 2007
Last update date Apr 10, 2007
Contact name Lynn M Amon
E-mail(s) lynn.amon@cidresearch.org
Organization name Fred Hutchinson Cancer Research Center
Department Division of Public Health Sciences
Lab Computation Biology Program
Street address 1100 Fairview, M1-C108
City Seattle
State/province WA
ZIP/Postal code 98109-1024
Country USA
 
Platform ID GPL890
Series (1)
GSE7483 Microarray analysis of aortic tissue from different rat hypertensive models

Data table header descriptions
ID_REF Agilent Feature Extraction feature number
VALUE -(log2((R-Rb)/(G-Gb)) Loess normalized in LIMMA and scaled normalized across arrays excl SHR_wash
R rMeanSignal
G gMeanSignal
Rb rBGMedianSignal
Gb gBGMedianSignal
FLAGGED feature or background signal was nonuniform or outlier flagged and removed
INV_VALUE log2((R-Rb)/(G-Gb)) Loess normalized in LIMMA and scaled normalized across arrays excl SHR_wash

Data table
ID_REF VALUE R G Rb Gb FLAGGED INV_VALUE
1 5.06215 101.9298 721.0702 60 59 0 -5.062153876
2 0.487119 71.5 86.68333 61 58 0 -0.487118675
3 -0.289342 94.84746 94.16949 61 59 0 0.28934159
4 0.242378 103.2 109.15 61 58 0 -0.242377833
5 0.119836 88.69231 96.98077 61 58 0 -0.119835526
6 0.15616 107.4655 110 60 58 0 -0.15615983
7 5.56913 90.17857 754.1071 60 58 0 -5.569129723
8 -0.188527 149.7869 118.5574 59 57 0 0.18852658
9 0.848619 98.08475 123.7288 60 58 0 -0.848618944
10 -0.00536641 344.5763 205.339 61 58 0 0.005366409
11 -0.125871 101.6949 100.8136 59 58 0 0.125871172
24 0.00439602 86.31579 92.85965 60 57 0 -0.004396016
25 0.139326 967.5667 496.9667 61 59 0 -0.139325512
26 0.252482 96.88333 106.3667 61 59 0 -0.252482094
27 -0.157578 161.4138 124.6724 60 58 0 0.157578251
28 5.64952 93.96552 852.8793 60 58 0 -5.649524893
29 -0.0745694 395.5345 219.931 59 58 0 0.074569425
30 0.20826 96.84746 105.5932 59 58 0 -0.208259667
31 -0.157862 141.1613 117.1613 59 58 0 0.157861826
32 -0.0161863 81.41379 91.46552 58 58 1 0.016186306

Total number of rows: 21544

Table truncated, full table size 1118 Kbytes.




Supplementary file Size Download File type/resource
GSM181295.txt.gz 5.0 Mb (ftp)(http) TXT

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