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Sample GSM181299 Query DataSets for GSM181299
Status Public on Apr 11, 2007
Title cy3:WKY control, biological rep 6g; cy5:pool of 6 WKY control rats
Sample type RNA
 
Channel 1
Source name medial layer of thorassic and abdominal aorta from pool of 6 WKY control rats
Organism Rattus norvegicus
Characteristics mean systolic blood pressure = 107+/-8 mm HG
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy kit
Label Cy5
Label protocol fluorescent linear amplification kit from Agilent
 
Channel 2
Source name medial layer of thorassic and abdominal aorta from untreated WKY rat
Organism Rattus norvegicus
Characteristics mean systolic blood pressure = 107+/-8 mm HG
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy kit
Label Cy3
Label protocol fluorescent linear amplification kit from Agilent
 
 
Hybridization protocol 60 C for 17 hours
Scan protocol Agilent DNA Microarray scanner
Description na
Data processing images analyzed with Agilent Feature Extraction v7.1,
 
Submission date Apr 09, 2007
Last update date Apr 10, 2007
Contact name Lynn M Amon
E-mail(s) lynn.amon@cidresearch.org
Organization name Fred Hutchinson Cancer Research Center
Department Division of Public Health Sciences
Lab Computation Biology Program
Street address 1100 Fairview, M1-C108
City Seattle
State/province WA
ZIP/Postal code 98109-1024
Country USA
 
Platform ID GPL890
Series (1)
GSE7483 Microarray analysis of aortic tissue from different rat hypertensive models

Data table header descriptions
ID_REF Agilent Feature Extraction feature number
VALUE -(log2((R-Rb)/(G-Gb)) Loess normalized in LIMMA and scaled normalized across arrays excl SHR_wash
R rMeanSignal
G gMeanSignal
Rb rBGMedianSignal
Gb gBGMedianSignal
FLAGGED feature or background signal was nonuniform or outlier flagged and removed
INV_VALUE log2((R-Rb)/(G-Gb)) Loess normalized in LIMMA and scaled normalized across arrays excl SHR_wash

Data table
ID_REF VALUE R G Rb Gb FLAGGED INV_VALUE
1 4.87029 117.3684 520.7018 58 53 0 -4.870291036
2 0.742122 73.26667 93.88333 58 54 0 -0.742121914
3 0.241538 88.80645 93.85484 58 53 0 -0.241537548
4 0.63199 110.3519 111.0556 57 53 0 -0.631990056
5 0.352225 96.7963 98.7963 56 52 0 -0.352224812
6 0.442273 126.3158 113.4211 57 54 0 -0.442272738
7 6.19315 77.91228 509.5439 59 56.5 1 -6.193149765
8 0.0611737 131.65 105.4667 58 54 0 -0.061173684
9 0.639595 83.61404 98.36842 58 53 0 -0.639594915
10 0.136569 323.7966 161.3051 58 53 0 -0.136568738
11 0.0539949 129.8276 105.2759 58 54.5 0 -0.053994863
24 0.202321 92.82456 95.17544 57 53 0 -0.20232146
25 -0.206141 1051.517 309.6667 57 54 0 0.206141065
26 0.591337 96.92857 104.8929 58 54 0 -0.59133678
27 -0.0893314 188.4068 117 57 54 0 0.089331446
28 5.94273 86.3 566.3833 57 54 0 -5.942729503
29 -0.0783289 499.8276 195.0172 57 54.5 0 0.078328894
30 -0.0102586 111.4035 99.40351 57 55 0 0.010258574
31 -0.301648 131.3276 99.82759 58 56 0 0.30164793
32 0.260528 81.59322 92.25424 57 54 0 -0.260527552

Total number of rows: 21544

Table truncated, full table size 1118 Kbytes.




Supplementary file Size Download File type/resource
GSM181299.txt.gz 5.0 Mb (ftp)(http) TXT

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