|
| Status |
Public on Feb 02, 2018 |
| Title |
Roots_CT_1 |
| Sample type |
RNA |
| |
|
| Source name |
Roots_CT
|
| Organism |
Mus musculus |
| Characteristics |
strain background: mixed
genotype/variation: control; DhhCre- Fasn lox/lox
age: P60
tissue: Roots
|
| Treatment protocol |
P60 mice were euthanized and tissue immediately dissected, transferred to eppendorfs and snap frozen in liquid nitrogen. Tissues were stored at -80C to be subsequently processed for total RNA extraction.
|
| Extracted molecule |
total RNA |
| Extraction protocol |
total RNA by Trizol/chloroform/ethanol extraction
|
| Label |
biotin
|
| Label protocol |
Biotinylated cRNA were prepared using the GeneAtlasTM 3’IVT Express Kit (Affymetrix) from 100ng total RNA
|
| |
|
| Hybridization protocol |
Following fragmentation, 10 ug of cRNA per sample were hybridized for 16 hr at 45C on Affymetrix MG-430 PM Array Strips. Strips were washed and stained using the Affymetrix GeneAtlas Fluidics Station.
|
| Scan protocol |
An Affymetrix GeneAtlas Imaging Station was used to measure the fluorescent intensity emitted by the labeled targets.
|
| Description |
RTCT1
|
| Data processing |
Signal estimates were calculated using RMA in Bioconductor (v.2.11).
|
| |
|
| Submission date |
Jul 27, 2015 |
| Last update date |
Feb 02, 2018 |
| Contact name |
Laura Montani |
| Organization name |
IMHS - ETH Zürich
|
| Street address |
Otto Stern Weg 7
|
| City |
Zürich |
| State/province |
ZH |
| ZIP/Postal code |
8093 |
| Country |
Switzerland |
| |
|
| Platform ID |
GPL11180 |
| Series (1) |
| GSE71373 |
Transcriptomic analysis of the peripheral nervous system of Schwann cell-conditional FASN knockout mice |
|
