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Sample GSM1875946 Query DataSets for GSM1875946
Status Public on Aug 17, 2017
Title Primary_Tumor 06_005
Sample type RNA
 
Source name Tissue samples taken from colorectal cancer patients
Organism Homo sapiens
Characteristics center: Nancy
Sex: Male
age: 74
who performance status: 1
tumor location: Left colon
synchronous metastase: Yes
pn: pN1
pt: pT3
regimen: FOLFIRI
response category: PR
response status: R
pfs censored: 1
pfs: 8.213552475
os censored: 0
os: 19.12114906
Treatment protocol Samples were collected before chemotherapy
Extracted molecule total RNA
Extraction protocol Rneasy kit (Qiagen) for total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the Affymetrix protocol.
 
Hybridization protocol Following fragmentation, cRNA were hybridized on GeneChip Human Genome U133 Plus 2.0 array.
Scan protocol GeneChips were scanned using a laser scanner.
Data processing Processing and normalization was done using the Robust Multi-array Average (RMA)
 
Submission date Sep 12, 2015
Last update date Aug 17, 2017
Contact name Pierre Martineau
E-mail(s) pierre.martineau@inserm.fr
Phone +33 4 67 61 37 43
Organization name Inserm
Department IRCM
Street address 208 Rue des Apothicaires
City Montpellier Cedex 5
ZIP/Postal code 34298
Country France
 
Platform ID GPL570
Series (2)
GSE72968 Molecular subtypes of metastatic colorectal cancer are predictive of patient response to chemo and targeted therapies (part 1)
GSE72970 Molecular subtypes of metastatic colorectal cancer are predictive of patient response to chemo and targeted therapies

Data table header descriptions
ID_REF
VALUE Normalized signal intensity

Data table
ID_REF VALUE
1007_s_at 11.0183319679587
1053_at 8.59428033512825
117_at 6.18283917644331
121_at 8.23872539900394
1255_g_at 3.14594429241561
1294_at 7.9524906055635
1316_at 5.48485472490812
1320_at 5.27973941297606
1405_i_at 6.86121475807797
1431_at 4.13155106036895
1438_at 7.05597071233083
1487_at 10.1636869073836
1494_f_at 6.21264599389164
1552256_a_at 9.99558071682159
1552257_a_at 9.25461752729219
1552258_at 5.40559975207961
1552261_at 4.65323997146299
1552263_at 6.80338057209548
1552264_a_at 7.81043063854411
1552266_at 3.94281358530553

Total number of rows: 54675

Table truncated, full table size 1479 Kbytes.




Supplementary file Size Download File type/resource
GSM1875946_D70601_VPA011_06-005_3mcgP.CEL.gz 5.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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