NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM189799 Query DataSets for GSM189799
Status Public on May 18, 2007
Title Normoxic SV129 array 1
Sample type RNA
 
Source name Whole lung homogenate
Organism Mus musculus
Characteristics Whole lung homogenate from SV129 mice kept at Denver altitude (85 kPa) for 4 weeks.
Extracted molecule total RNA
Extraction protocol right lung was removed immediately after sacrifice, snap frozen, and later converted to RNA using Qiagen rnEasy columns.
Label Biotin
Label protocol following Affymetrix GeneChip Expression Analysis Manual
 
Hybridization protocol following Affymetrix GeneChip Expression Analysis Manual
Scan protocol following Affymetrix GeneChip Expression Analysis Manual
Description Whole lung homogenate from SV129 mice kept at Denver altitude (85 kPa) for 4 weeks.
Data processing Affymetrix chp and cel files
 
Submission date May 16, 2007
Last update date Aug 28, 2018
Contact name James West
E-mail(s) j.west@vanderbilt.edu
Organization name Vanderbilt University
Department Medicine
Lab Pulmonary
Street address 4200 E 9TH Ave, Box B133
City Nashville
State/province TN
ZIP/Postal code 37201
Country USA
 
Platform ID GPL1261
Series (1)
GSE7823 Murine Pulmonary Response to Chronic Hypoxia is Strain Specific
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE Expression level
ABS_CALL present or absent call
DETECTION P-VALUE p value for present or absent

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 152.642 P 0.0020226
AFFX-BioB-M_at 216.079 P 9.4506e-05
AFFX-BioB-3_at 105.297 P 0.00179591
AFFX-BioC-5_at 440.623 P 0.000146581
AFFX-BioC-3_at 306.72 P 6.02111e-05
AFFX-BioDn-5_at 6602.57 P 4.42873e-05
AFFX-BioDn-3_at 10667.4 P 4.42873e-05
AFFX-CreX-5_at 13229.2 P 4.42873e-05
AFFX-CreX-3_at 15468.8 P 4.42873e-05
AFFX-DapX-5_at 21.27 M 0.0629293
AFFX-DapX-M_at 26.4574 A 0.185131
AFFX-DapX-3_at 18.4847 A 0.41138
AFFX-LysX-5_at 3.51104 A 0.672935
AFFX-LysX-M_at 3.75422 A 0.783476
AFFX-LysX-3_at 18.5488 A 0.0780018
AFFX-PheX-5_at 2.79217 A 0.749204
AFFX-PheX-M_at 1.2268 A 0.953533
AFFX-PheX-3_at 38.9103 A 0.116113
AFFX-ThrX-5_at 3.77426 A 0.772364
AFFX-ThrX-M_at 8.92475 A 0.631562

Total number of rows: 45101

Table truncated, full table size 1396 Kbytes.




Supplementary file Size Download File type/resource
GSM189799.CEL.gz 6.3 Mb (ftp)(http) CEL
GSM189799.CHP.gz 11.4 Mb (ftp)(http) CHP
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap