|
Status |
Public on Sep 01, 2016 |
Title |
SPECS_1939 |
Sample type |
genomic |
|
|
Source name |
SPECS_1939
|
Organism |
Homo sapiens |
Characteristics |
tissue: tumor cell type: ABC DLBCL cells disease state: activated B cell-like (ABC) subtype of diffuse large B cell lymphoma (DLBCL) individual: SPECS_1939
|
Extracted molecule |
genomic DNA |
Extraction protocol |
QIAGEN AllPrep DNA/RNA Mini Protocol Other: Genomic DNA was isolated using QIAGEN AllPrep DNA/RNA Mini Kit.
|
Label |
biotin
|
Label protocol |
Affymetrix Labeling Protocol Other: Fragmented PCR products were terminally labeled with biotin according to the manufacturer's protocol.
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|
|
Hybridization protocol |
Affymetrix Hybridization Protocol Other: Fragmented single-stranded sense DNA were hybridized to the Affymetrix Genome-Wide Human SNP 6.0 array. Arrays were hybridized in the GeneChip Hybridization Oven 645 and stained in the GeneChip Fluidics Station 450.
|
Scan protocol |
Scanning Protocol Other: Arrays were scanned on a GeneChip Scanner 3000-7G (Affymetrix).
|
Description |
No additional information.
|
Data processing |
Data Processing Protocol Calculation Method: The Affy SNP datsets were normalized and signal called by Affy GTC (version 4.2.0.26) using CNV analysis with the default parameters.
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Submission date |
Sep 30, 2015 |
Last update date |
Sep 01, 2016 |
Contact name |
Louis M. Staudt |
E-mail(s) |
lstaudt@mail.nih.gov
|
Phone |
301-402-1892
|
Organization name |
National Cancer Institute
|
Department |
Lymphoid Malignancies Branch
|
Lab |
Louis M Staudt
|
Street address |
9000 Rockville Pike, Bldg 10, Rm 4N114
|
City |
Bethesda |
State/province |
MD |
ZIP/Postal code |
20892 |
Country |
USA |
|
|
Platform ID |
GPL6801 |
Series (1) |
GSE73639 |
Targeting Non-proteolytic Protein Ubiquitination for the Treatment of Diffuse Large B Cell Lymphoma (Affy SNP6.0 Arrays) |
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