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Status
Public on Mar 28, 2004
Title
Mouse Hypothalamus Male 3 (technical replicate)
Sample type
RNA
Source name
Mouse Hypothalamus
Organism
Mus musculus
Extracted molecule
total RNA
Description
Triple selected polyA RNA for liver, kidney, ovary, testis, was obtained from Ambion (Austin, TX). Total RNA was obtained form Ambion for hypothalamus samples. All RNA samples had an agilent ratio greater than 1 indicating that degradation had not occurred. All RNA samples were prepared from a pool of 10 different animals. The total RNA samples were labeled for hybridization onto the microarray according to affymetrix protocols listed at:http://keck.med.yale.edu/affymetrix/protocols Keywords = Sex Specific Transcription, Mouse, Affymetrix, Healthy Mammalian Tissue
Submission date
Mar 26, 2004
Last update date
May 27, 2005
Contact name
Joel Rozowsky
E-mail(s)
rozowsky@csb.yale.edu
Phone
203-432-5405
Organization name
Yale University
Department
Molecular Biophysics & Biochemistry
Lab
Gerstein Lab
Street address
266 Whitney Ave, Bass 437
City
New Haven
State/province
CT
ZIP/Postal code
06520
Country
USA
Platform ID
GPL339
Series (1)
GSE1148
Sex Specific Transciption in Mouse Tissues
Data table header descriptions
ID_REF
VALUE
MAS 5.0 Intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
240.4
P
0.006187
AFFX-BioB-M_at
244.3
P
0.001102
AFFX-BioB-3_at
144.0
P
0.004484
AFFX-BioC-5_at
528.2
P
0.000169
AFFX-BioC-3_at
373.2
P
0.000095
AFFX-BioDn-5_at
431.0
P
0.000095
AFFX-BioDn-3_at
2617.4
P
0.000340
AFFX-CreX-5_at
4837.7
P
0.000044
AFFX-CreX-3_at
7664.9
P
0.000044
AFFX-DapX-5_at
37.1
A
0.185131
AFFX-DapX-M_at
46.1
A
0.250796
AFFX-DapX-3_at
31.4
A
0.760937
AFFX-LysX-5_at
18.0
A
0.354453
AFFX-LysX-M_at
7.2
A
0.712257
AFFX-LysX-3_at
30.8
A
0.195266
AFFX-PheX-5_at
6.8
A
0.883887
AFFX-PheX-M_at
4.8
A
0.724854
AFFX-PheX-3_at
16.1
A
0.574038
AFFX-ThrX-5_at
11.2
A
0.760937
AFFX-ThrX-M_at
32.0
A
0.250796
Total number of rows: 22690 Table truncated, full table size 631 Kbytes .Supplementary data files not provided