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Sample GSM1940021 Query DataSets for GSM1940021
Status Public on Apr 11, 2019
Title H9 embryonic stem cells, Ncad negative SSEA3 positive sorted population, biological rep3
Sample type RNA
 
Source name H9 embryonic stem cells
Organism Homo sapiens
Characteristics sorted cells: Ncad negative SSEA3 positive
Growth protocol MEF conditioned medium + 8ng/ml bFGF
Extracted molecule total RNA
Extraction protocol Extraction of total RNA using total RNA purification kit (Norgen Biotek, Canada) was performed according to the manufacturer's instructions.
Label biotin
Label protocol In accordance with manufacturer's protocols
 
Hybridization protocol In accordance with manufacturer's protocols
Scan protocol GeneChips were scanned using Affymetrix® Scanner 3000 7G.
Data processing Data was normalized using Robust Multichip Averaging (RMA) algorithm using Partek Genomics Suite 6.6 software.
 
Submission date Nov 13, 2015
Last update date Apr 12, 2019
Contact name Mickie Bhatia
E-mail(s) mbhatia@mcmaster.ca
Organization name McMaster University
Department Stem Cell and Cancer Research Institute (SCC-RI)
Street address 1200 Main Street West
City Hamilton
State/province Ontario
ZIP/Postal code L8N 3Z5
Country Canada
 
Platform ID GPL6244
Series (1)
GSE74990 Human pluripotency is initiated and preserved by a unique subset of founder cells [microarray]

Data table header descriptions
ID_REF
VALUE Log2 RMA Normalized signal intensity

Data table
ID_REF VALUE
7892501 2.85739
7892502 6.4251
7892503 4.19285
7892504 9.01291
7892505 4.73466
7892506 6.60245
7892507 5.97508
7892508 6.42197
7892509 12.4617
7892510 5.04587
7892511 4.82294
7892512 7.55521
7892513 4.18768
7892514 10.6908
7892515 10.4912
7892516 5.60415
7892517 5.82759
7892518 4.46073
7892519 6.13904
7892520 10.2829

Total number of rows: 33297

Table truncated, full table size 516 Kbytes.




Supplementary file Size Download File type/resource
GSM1940021_H9_Ncad_neg_SSEA3_pos_3.CEL.gz 4.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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