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Sample GSM2009 Query DataSets for GSM2009
Status Public on Jun 27, 2002
Title Blood B cells;anti-IgM+CD40L+IL-4 24h
Sample type RNA
 
Channel 1
Source name Lymphopool
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name Blood B cells;anti-IgM+CD40L+IL-4 24h
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Lymphoma Classification
Subcategory: Normal lymphoid subsets
Scanning Software: ScanAlyze
Software version: 2.30
Lot batch = lc7b105
 
Submission date Jun 18, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL175
Series (1)
GSE60 Diffuse large B-cell lymphoma

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 132 114 174 1439 747 856 692 577 622 1199 .757 0 1.839 4.642 52 25 .233 .28 4.293 3.577 8.658 1152 156 95 109 123 137 1.839
2 123 111 2030 3293 2660 714 633 527 2217 2744 .966 0 .127 1.269 69 53 .763 .916 1.31 1.092 1.346 966 156 95 109 140 154 .127
3 125 113 2398 11566 10956 707 610 508 9129 9638 0 0 1.929 4.508 84 88 .219 .263 4.569 3.807 0 980 156 95 109 158 172 1.929
4 179 115 5136 3743 3131 889 612 510 2609 3119 0 0 -.977 .613 84 74 1.64 1.969 .61 .508 0 966 156 96 110 175 189 -.977
5 224 115 9109 17324 16693 1249 631 526 13910 14436 0 0 .611 1.758 86 82 .546 .655 1.833 1.527 0 980 156 96 110 193 207 .611
6 174 114 2080 3347 2747 1026 600 500 2289 2789 .949 0 .138 1.327 74 63 .757 .909 1.321 1.1 1.3 995 156 96 110 210 224 .138
7 138 111 106 808 231 725 577 481 192 673 .463 0 .861 3.304 28 20 .459 .551 2.179 1.816 1.064 968 156 97 111 228 242 .861
8 139 110 575 951 355 739 596 497 296 792 .831 0 -.959 .657 58 47 1.62 1.944 .617 .514 .634 976 156 97 111 245 259 -.959
9 127 101 2995 5045 4499 652 546 455 3749 4204 0 0 .324 1.527 77 63 .666 .799 1.502 1.252 0 1000 156 97 111 263 277 .324
10 155 111 4737 4432 3881 716 551 459 3234 3693 0 0 -.551 .876 69 63 1.221 1.465 .819 .683 0 968 156 98 112 281 295 -.551
11 160 115 1615 1746 1154 867 592 493 962 1455 .651 0 -.748 .729 75 63 1.399 1.679 .715 .595 .531 978 156 98 112 298 312 -.748
12 117 103 2798 1283 747 684 536 447 622 1069 .853 0 -2.168 .283 79 58 3.746 4.495 .267 .222 .206 988 156 98 112 316 330 -2.168
13 174 111 5408 8213 7671 768 542 452 6392 6844 0 0 .241 1.363 85 74 .705 .846 1.418 1.182 0 966 156 99 113 333 347 .241
14 168 108 2088 5633 5091 709 542 452 4242 4694 0 0 1.023 2.36 44 44 .41 .492 2.438 2.032 0 980 156 99 113 351 365 1.023
15 126 104 1469 3328 2801 602 527 439 2334 2773 2.492 0 .668 2.245 45 38 .524 .629 1.907 1.589 1.892 966 156 100 114 368 382 .668
16 256 96 1759 3348 2873 851 475 396 2394 2790 0 0 .445 1.656 48 47 .612 .735 1.633 1.361 0 968 156 100 114 386 400 .445
17 306 90 3063 6677 6268 880 409 341 5223 5564 0 0 .77 2.076 46 40 .489 .586 2.046 1.705 0 976 156 100 114 403 417 .77
18 244 99 3844 6324 5888 1265 436 363 4906 5270 0 0 .352 1.616 64 60 .653 .783 1.532 1.276 0 980 156 101 115 421 435 .352
19 227 106 6376 22237 21738 1304 499 416 18114 18530 0 0 1.506 3.077 69 69 .293 .352 3.409 2.841 0 980 156 101 115 439 453 1.506
20 436 117 65 659 75 1850 584 487 62 549 .816 0 -.057 3.978 10 12 .867 1.04 1.154 .961 2.238 986 156 101 115 456 470 -.057

Total number of rows: 9216

Table truncated, full table size 1128 Kbytes.




Supplementary data files not provided
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