NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL175 Query DataSets for GPL175
Status Public on Jun 27, 2002
Title LC-7b
Technology type spotted DNA/cDNA
Distribution non-commercial
Organism Homo sapiens
 
Description A microarray with 9216 spot features.
Tip Configuration: Standard 16-tip
Columns per Sector: 24
Rows per Sector: 24
Column Spacing: 175
Row Spacing: 175
 
Submission date May 22, 2002
Last update date May 26, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Samples (59) GSM1985, GSM1986, GSM1987, GSM1988, GSM1989, GSM1990 
Series (2)
GSE60 Diffuse large B-cell lymphoma
GSE3611 Stereotyped and specific gene expression programs in human innate immune responses to bacteria.

Data table header descriptions
ID unique spot identifier
NAME name of spot
CLONE_ID cDNA clone identifier
GENE_SYM gene symbol
GENE_NAME gene name, description
UNIGENE NCBI UniGene cluster identifier
GB_ACC GenBank accession number
SPOT_ID
PREFERRED_NAME preferred gene name
SECTOR spot sector grid coordinate
SECTORROW spot row grid coordinate
SECTORCOL spot column grid coordinate
SOURCE
PLATE clone plate identifier
PROW clone plate row
PCOL clone plate column
FAILED
IS_VERIFIED
IS_CONTAMINATED
LUID laboratory unique identifier

Data table
ID NAME CLONE_ID GENE_SYM GENE_NAME UNIGENE GB_ACC SPOT_ID PREFERRED_NAME SECTOR SECTORROW SECTORCOL SOURCE PLATE PROW PCOL FAILED IS_VERIFIED IS_CONTAMINATED LUID
1 59863 IMAGE:1341176 KIAA0130 KIAA0130 gene product 23106 AA768786 Unknown sc_id6647 1 1 1 [(LC384:35a1), (LC96:194a1)] 1 A 1 0 N U 18529
2 59867 IMAGE:1341214 PPP3CC protein phosphatase 3 (formerly 2B), catalytic subunit, gamma isoform (calcineurin A gamma) 75206 AA805528 Calcineurin A catalytic subunit 1 1 2 [(LC384:35a5), (LC96:194a3)] 1 A 5 0 N U 18531
3 59871 IMAGE:1341469 IGHM immunoglobulin heavy constant mu 302063 AA806043 Immunoglobulin delta 3 region 1 1 3 [(LC384:35a9), (LC96:194a5)] 1 A 9 0 N U 18533
4 59875 IMAGE:1350451 DNMT1 DNA (cytosine-5-)-methyltransferase 1 77462 AA806335 DNA (cytosine-5-)-methyltransferase 1 1 4 [(LC384:35a13), (LC96:194a7)] 1 A 13 0 N U 18535
5 59879 IMAGE:1350713 HLA-DRA major histocompatibility complex, class II, DR alpha 76807 AA806098 MHC Class II=DR alpha 1 1 5 [(LC384:35a17), (LC96:194a9)] 1 A 17 0 N U 18537
6 59883 IMAGE:1350927 ARAF1 v-raf murine sarcoma 3611 viral oncogene homolog 1 77183 AA806420 A-raf=c-raf-1 kinase 1 1 6 [(LC384:35a21), (LC96:194a11)] 1 A 21 0 N U 18539
7 59959 IMAGE:1352379 BIRC3 baculoviral IAP repeat-containing 3 127799 AA828467 c-IAP2=MIHC=IAP homolog C=TNFR2-TRAF signalling complex prot 1 1 7 [(LC384:35e1), (LC96:194c1)] 1 E 1 0 N U 18553
8 59963 IMAGE:1352411 ITGA3 integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor) 265829 AA828486 CD49C=Integrin alpha 3 1 1 8 [(LC384:35e5), (LC96:194c3)] 1 E 5 0 N U 18555
9 59966 IMAGE:1352447 GART phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase 82285 AA828538 Phosphoribosylglycinamide formyltransferase, phosphoribosylg 1 1 9 [(LC384:35e9), (LC96:194c5)] 1 E 9 0 N U 18557
10 59970 IMAGE:1352658 SRPK1 SFRS protein kinase 1 75761 AA830216 SRPK1=serine kinase 1 1 10 [(LC384:35e13), (LC96:194c7)] 1 E 13 0 N U 18559
11 59974 IMAGE:1352797 SIVA CD27-binding (Siva) protein 112058 AA828519 CD27 Binding Protein=Siva=proapoptotic protein 1 1 11 [(LC384:35e17), (LC96:194c9)] 1 E 17 0 N U 18561
12 59978 IMAGE:1353030 TNFRSF7 tumor necrosis factor receptor superfamily, member 7 180841 AA830238 CD27 1 1 12 [(LC384:35e21), (LC96:194c11)] 1 E 21 0 N U 18563
13 60050 IMAGE:1354406 SSR4 signal sequence receptor, delta (translocon-associated protein delta) 102135 AA831222 Rat translocon-associated protein delta homolog 1 1 13 [(LC384:35i1), (LC96:194e1)] 1 I 1 0 N U 18577
14 60054 IMAGE:1354772 HLC14-06-P putative oncogene protein hlc14-06-p 6817 AA825294 putative oncogene protein similar to C. elegans ZC395.7 gene 1 1 14 [(LC384:35i5), (LC96:194e3)] 1 I 5 0 N U 18579
15 60058 IMAGE:1355339 GSTTLp28 glutathione-S-transferase like; glutathione transferase omega 11465 AA831193 glutathione-S-transferase homolog 1 1 15 [(LC384:35i9), (LC96:194e5)] 1 I 9 0 N U 18581
16 60062 IMAGE:1355461 GTF2F2 general transcription factor IIF, polypeptide 2 (30kD subunit) 58593 AA831445 TFIIF-beta=Transcription initiation factor IIF, beta subunit 1 1 16 [(LC384:35i13), (LC96:194e7)] 1 I 13 0 N U 18583
17 60066 IMAGE:1355675 NCOA3 nuclear receptor coactivator 3 225977 AA824532 Unknown 1 1 17 [(LC384:35i17), (LC96:194e9)] 1 I 17 0 N U 18585
18 60070 IMAGE:1355812 UBE2B ubiquitin-conjugating enzyme E2B (RAD6 homolog) 811 AA824433 Ubiquitin-conjugating enzyme E2B (RAD6 homolog) 1 1 18 [(LC384:35i21), (LC96:194e11)] 1 I 21 0 N U 18587
19 60138 IMAGE:1357360 CCND2 cyclin D2 75586 AA831970 Cyclin D2/KIAK0002=3 end of KIAK0002 cDNA 1 1 19 [(LC384:35m1), (LC96:194g1)] 1 M 1 0 N U 18601
20 60140 IMAGE:1357413 IFI35 interferon-induced protein 35 50842 AA832092 IFP35=interferon-induced leucine zipper protein 1 1 20 [(LC384:35m5), (LC96:194g3)] 1 M 5 0 N U 18603

Total number of rows: 9216

Table truncated, full table size 1408 Kbytes.






Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap