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Status
Public on Jun 27, 2002
Title
LC-7b
Technology type
spotted DNA/cDNA
Distribution
non-commercial
Organism
Homo sapiens
Description
A microarray with 9216 spot features. Tip Configuration: Standard 16-tip Columns per Sector: 24 Rows per Sector: 24 Column Spacing: 175 Row Spacing: 175
Submission date
May 22, 2002
Last update date
May 26, 2005
Organization
Stanford Microarray Database (SMD)
E-mail(s)
array@genome.stanford.edu
Phone
650-498-6012
URL
http://genome-www5.stanford.edu/
Department
Stanford University, School of Medicine
Street address
300 Pasteur Drive
City
Stanford
State/province
CA
ZIP/Postal code
94305
Country
USA
Samples (59)
GSM1985 , GSM1986 , GSM1987 , GSM1988 , GSM1989 , GSM1990
GSM1991 ,
GSM1992 ,
GSM1993 ,
GSM1994 ,
GSM1995 ,
GSM1996 ,
GSM1997 ,
GSM1998 ,
GSM1999 ,
GSM2000 ,
GSM2001 ,
GSM2002 ,
GSM2003 ,
GSM2004 ,
GSM2005 ,
GSM2006 ,
GSM2007 ,
GSM2008 ,
GSM2009 ,
GSM2010 ,
GSM2011 ,
GSM2012 ,
GSM2013 ,
GSM2014 ,
GSM2015 ,
GSM2016 ,
GSM2017 ,
GSM2018 ,
GSM2019 ,
GSM83270 ,
GSM83274 ,
GSM83275 ,
GSM83276 ,
GSM83310 ,
GSM83313 ,
GSM83316 ,
GSM83319 ,
GSM83321 ,
GSM83323 ,
GSM83325 ,
GSM83326 ,
GSM83327 ,
GSM83347 ,
GSM83349 ,
GSM83351 ,
GSM83352 ,
GSM83353 ,
GSM83354 ,
GSM83355 ,
GSM83377 ,
GSM83378 ,
GSM83379 ,
GSM83406
Series (2)
GSE60
Diffuse large B-cell lymphoma
GSE3611
Stereotyped and specific gene expression programs in human innate immune responses to bacteria.
Data table header descriptions
ID
unique spot identifier
NAME
name of spot
CLONE_ID
cDNA clone identifier
GENE_SYM
gene symbol
GENE_NAME
gene name, description
UNIGENE
NCBI UniGene cluster identifier
GB_ACC
GenBank accession number
SPOT_ID
PREFERRED_NAME
preferred gene name
SECTOR
spot sector grid coordinate
SECTORROW
spot row grid coordinate
SECTORCOL
spot column grid coordinate
SOURCE
PLATE
clone plate identifier
PROW
clone plate row
PCOL
clone plate column
FAILED
IS_VERIFIED
IS_CONTAMINATED
LUID
laboratory unique identifier
Data table
ID
NAME
CLONE_ID
GENE_SYM
GENE_NAME
UNIGENE
GB_ACC
SPOT_ID
PREFERRED_NAME
SECTOR
SECTORROW
SECTORCOL
SOURCE
PLATE
PROW
PCOL
FAILED
IS_VERIFIED
IS_CONTAMINATED
LUID
1
59863
IMAGE:1341176
KIAA0130
KIAA0130 gene product
23106
AA768786
Unknown sc_id6647
1
1
1
[(LC384:35a1), (LC96:194a1)]
1
A
1
0
N
U
18529
2
59867
IMAGE:1341214
PPP3CC
protein phosphatase 3 (formerly 2B), catalytic subunit, gamma isoform (calcineurin A gamma)
75206
AA805528
Calcineurin A catalytic subunit
1
1
2
[(LC384:35a5), (LC96:194a3)]
1
A
5
0
N
U
18531
3
59871
IMAGE:1341469
IGHM
immunoglobulin heavy constant mu
302063
AA806043
Immunoglobulin delta 3 region
1
1
3
[(LC384:35a9), (LC96:194a5)]
1
A
9
0
N
U
18533
4
59875
IMAGE:1350451
DNMT1
DNA (cytosine-5-)-methyltransferase 1
77462
AA806335
DNA (cytosine-5-)-methyltransferase
1
1
4
[(LC384:35a13), (LC96:194a7)]
1
A
13
0
N
U
18535
5
59879
IMAGE:1350713
HLA-DRA
major histocompatibility complex, class II, DR alpha
76807
AA806098
MHC Class II=DR alpha
1
1
5
[(LC384:35a17), (LC96:194a9)]
1
A
17
0
N
U
18537
6
59883
IMAGE:1350927
ARAF1
v-raf murine sarcoma 3611 viral oncogene homolog 1
77183
AA806420
A-raf=c-raf-1 kinase
1
1
6
[(LC384:35a21), (LC96:194a11)]
1
A
21
0
N
U
18539
7
59959
IMAGE:1352379
BIRC3
baculoviral IAP repeat-containing 3
127799
AA828467
c-IAP2=MIHC=IAP homolog C=TNFR2-TRAF signalling complex prot
1
1
7
[(LC384:35e1), (LC96:194c1)]
1
E
1
0
N
U
18553
8
59963
IMAGE:1352411
ITGA3
integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor)
265829
AA828486
CD49C=Integrin alpha 3
1
1
8
[(LC384:35e5), (LC96:194c3)]
1
E
5
0
N
U
18555
9
59966
IMAGE:1352447
GART
phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase
82285
AA828538
Phosphoribosylglycinamide formyltransferase, phosphoribosylg
1
1
9
[(LC384:35e9), (LC96:194c5)]
1
E
9
0
N
U
18557
10
59970
IMAGE:1352658
SRPK1
SFRS protein kinase 1
75761
AA830216
SRPK1=serine kinase
1
1
10
[(LC384:35e13), (LC96:194c7)]
1
E
13
0
N
U
18559
11
59974
IMAGE:1352797
SIVA
CD27-binding (Siva) protein
112058
AA828519
CD27 Binding Protein=Siva=proapoptotic protein
1
1
11
[(LC384:35e17), (LC96:194c9)]
1
E
17
0
N
U
18561
12
59978
IMAGE:1353030
TNFRSF7
tumor necrosis factor receptor superfamily, member 7
180841
AA830238
CD27
1
1
12
[(LC384:35e21), (LC96:194c11)]
1
E
21
0
N
U
18563
13
60050
IMAGE:1354406
SSR4
signal sequence receptor, delta (translocon-associated protein delta)
102135
AA831222
Rat translocon-associated protein delta homolog
1
1
13
[(LC384:35i1), (LC96:194e1)]
1
I
1
0
N
U
18577
14
60054
IMAGE:1354772
HLC14-06-P
putative oncogene protein hlc14-06-p
6817
AA825294
putative oncogene protein similar to C. elegans ZC395.7 gene
1
1
14
[(LC384:35i5), (LC96:194e3)]
1
I
5
0
N
U
18579
15
60058
IMAGE:1355339
GSTTLp28
glutathione-S-transferase like; glutathione transferase omega
11465
AA831193
glutathione-S-transferase homolog
1
1
15
[(LC384:35i9), (LC96:194e5)]
1
I
9
0
N
U
18581
16
60062
IMAGE:1355461
GTF2F2
general transcription factor IIF, polypeptide 2 (30kD subunit)
58593
AA831445
TFIIF-beta=Transcription initiation factor IIF, beta subunit
1
1
16
[(LC384:35i13), (LC96:194e7)]
1
I
13
0
N
U
18583
17
60066
IMAGE:1355675
NCOA3
nuclear receptor coactivator 3
225977
AA824532
Unknown
1
1
17
[(LC384:35i17), (LC96:194e9)]
1
I
17
0
N
U
18585
18
60070
IMAGE:1355812
UBE2B
ubiquitin-conjugating enzyme E2B (RAD6 homolog)
811
AA824433
Ubiquitin-conjugating enzyme E2B (RAD6 homolog)
1
1
18
[(LC384:35i21), (LC96:194e11)]
1
I
21
0
N
U
18587
19
60138
IMAGE:1357360
CCND2
cyclin D2
75586
AA831970
Cyclin D2/KIAK0002=3 end of KIAK0002 cDNA
1
1
19
[(LC384:35m1), (LC96:194g1)]
1
M
1
0
N
U
18601
20
60140
IMAGE:1357413
IFI35
interferon-induced protein 35
50842
AA832092
IFP35=interferon-induced leucine zipper protein
1
1
20
[(LC384:35m5), (LC96:194g3)]
1
M
5
0
N
U
18603
Total number of rows: 9216 Table truncated, full table size 1408 Kbytes .
Supplementary data files not provided