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Sample GSM2017 Query DataSets for GSM2017
Status Public on Jun 27, 2002
Title CLL-52 || lc7b069
Sample type RNA
 
Channel 1
Source name Lymphopool
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name CLL-52
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Lymphoma Classification
Subcategory: Chronic Lymphocytic Leukemia
Scanning Software: ScanAlyze
Software version: 2.30
Lot batch = lc7b069
 
Submission date Jun 18, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL175
Series (1)
GSE60 Diffuse large B-cell lymphoma

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 69 63 131 224 84 156 140 451 271 722 .733 0 1.049 .788 56 44 1.56 .483 .641 2.069 .592 1182 156 73 87 100 114 1.049
2 71 67 1028 759 620 148 139 448 2000 2448 .895 0 .96 .677 66 67 1.658 .514 .603 1.946 .527 957 156 73 87 119 133 .96
3 70 66 1118 1849 1715 143 134 432 5532 5964 .896 0 2.307 1.527 70 68 .652 .202 1.534 4.948 1.345 932 156 73 87 137 151 2.307
4 71 67 2569 438 305 140 133 429 983 1412 .855 0 -1.386 .131 74 62 8.423 2.613 .119 .383 .105 929 156 73 87 154 168 -1.386
5 78 75 5800 3840 3705 145 135 435 11952 12387 0 0 1.043 .702 88 83 1.565 .485 .639 2.061 0 955 156 73 87 172 186 1.043
6 80 77 1223 813 677 146 136 438 2184 2622 .86 0 .837 .556 66 66 1.806 .56 .554 1.786 .474 924 156 73 87 190 204 .837
7 77 72 216 208 71 147 137 441 229 670 .729 0 .084 .705 42 28 3.042 .943 .329 1.06 .278 914 156 73 87 207 221 .084
8 81 76 459 307 167 149 140 451 539 990 .72 0 .232 .38 62 58 2.749 .852 .364 1.174 .287 932 156 72 86 225 239 .232
9 88 84 1683 421 276 155 145 467 891 1358 .88 0 -.918 .198 74 63 6.098 1.889 .164 .529 .149 929 156 72 86 242 256 -.918
10 95 88 2697 463 314 157 149 480 1013 1493 .804 0 -1.413 .124 69 59 8.589 2.662 .116 .376 .106 955 156 72 86 260 274 -1.413
11 96 89 1172 367 217 159 150 483 700 1183 .764 0 -.744 .209 68 64 5.401 1.674 .185 .597 .144 932 156 72 86 278 292 -.744
12 95 87 1796 802 648 163 154 496 2091 2587 .864 0 .219 .384 69 64 2.772 .859 .361 1.164 .307 929 156 72 86 295 309 .219
13 92 86 3329 887 737 162 150 483 2378 2861 .859 0 -.485 .244 72 62 4.517 1.4 .221 .714 .193 943 156 72 86 313 327 -.485
14 88 83 1522 585 431 164 154 496 1391 1887 .868 0 -.13 .308 71 67 3.531 1.094 .283 .914 .249 985 156 70 84 330 344 -.13
15 91 87 1638 479 323 165 156 503 1042 1545 .747 0 -.653 .212 73 66 5.071 1.572 .197 .636 .15 990 156 70 84 348 362 -.653
16 89 85 1311 425 272 162 153 493 877 1370 .645 0 -.58 .175 67 62 4.82 1.495 .207 .669 .16 966 156 70 84 366 380 -.58
17 87 82 3366 1342 1188 160 154 496 3833 4329 .897 0 .187 .354 75 64 2.833 .878 .353 1.139 .315 955 156 70 84 383 397 .187
18 89 84 2441 936 778 166 158 509 2510 3019 .875 0 .04 .335 71 63 3.138 .973 .319 1.028 .284 968 156 70 84 401 415 .04
19 97 85 2874 682 515 175 167 538 1662 2200 .836 0 -.79 .212 81 69 5.581 1.729 .179 .578 .15 985 156 69 83 418 432 -.79
20 97 84 485 308 144 172 164 529 464 993 .72 0 -.064 .327 62 53 3.368 1.045 .297 .957 .244 999 156 69 83 436 450 -.064

Total number of rows: 9216

Table truncated, full table size 1086 Kbytes.




Supplementary data files not provided
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