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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Sep 09, 2019 |
| Title |
DNM1-48hrs |
| Sample type |
SRA |
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| Source name |
dorsal neocortex
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| Organism |
Mus musculus |
| Characteristics |
strain: C57BL/6
tissue subtype: in utero electroporation
sample type: Laser-microdissected
time point: dnMAML 48hrs survival
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| Extracted molecule |
total RNA |
| Extraction protocol |
Qiagen RNAeasy microkit
standard illumina strand specific protocol
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| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2000 |
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| Description |
DNM1-48hrs
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| Data processing |
Tophat 1.42
Samtools 0.1.18; samtools sort -n; samtools view
Samtools 0.1.18
RSEQTools 0.6; sam2mrf; mrfQuantifier
Genome_build: hg19/RheMac2/mm9
Supplementary_files_format_and_content: EnsemblGene/RPKM
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| Submission date |
Jan 04, 2016 |
| Last update date |
Sep 11, 2019 |
| Contact name |
Albert E. Ayoub |
| Organization name |
Yale University
|
| Department |
Neurobiology
|
| Street address |
333 Cedar St. SHM C317
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| City |
New Haven |
| State/province |
CT |
| ZIP/Postal code |
06460 |
| Country |
USA |
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| Platform ID |
GPL13112 |
| Series (1) |
| GSE76491 |
Coordination of neuron production in mouse and human cerebral cortex by the homolog of Drosophila Mastermind protein |
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| Relations |
| BioSample |
SAMN04382954 |
| SRA |
SRX1514696 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM2026599_DNM1-48hrs.2way.rpkm.gz |
159.6 Kb |
(ftp)(http) |
RPKM |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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