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Sample GSM2044177 Query DataSets for GSM2044177
Status Public on Apr 01, 2016
Title Blood Infected_Day 3 rep 7_experiment_1
Sample type RNA
 
Source name Mouse Blood_Infected_Day 3
Organism Mus musculus
Characteristics strain: C57BL/6
genotype: wildtype
gender: Female
tissue: Blood
treatment: Infected_Day 3
experiment: 1
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 7
8697771054_D
Data processing The data were normalised using quantile normalisation with GeneSpring GX12.1
 
Submission date Jan 21, 2016
Last update date Apr 01, 2016
Contact name Krzysztof Potempa
E-mail(s) potempak@gmail.com
Organization name National Institute for Medical Research (NIMR)
Street address The Ridgeway
City London
ZIP/Postal code NW7 1AA
Country United Kingdom
 
Platform ID GPL6887
Series (1)
GSE77102 Analysis of transcriptional signatures in response to Listeria monocytogenes infection reveals temporal and strain dependent changes in interferon signalling

Data table header descriptions
ID_REF
VALUE quantile normalized

Data table
ID_REF VALUE
ILMN_2659724 -0.079378605
ILMN_2713160 -0.079378605
ILMN_1219601 0.7793386
ILMN_1252621 -0.2148335
ILMN_2574839 0.37290812
ILMN_3162407 0.12104273
ILMN_2514723 -0.03087902
ILMN_2692952 -0.54207957
ILMN_1257952 -0.079378605
ILMN_1236559 -0.079378605
ILMN_2910076 -0.079378605
ILMN_1240428 -0.68118477
ILMN_2459211 0.33939767
ILMN_2718462 -0.06317663
ILMN_2882078 0.101396084
ILMN_2882079 -0.29623616
ILMN_2570659 -0.7150705
ILMN_2465544 -0.079378605
ILMN_2724039 -0.079378605
ILMN_2598594 -0.079378605

Total number of rows: 45281

Table truncated, full table size 1110 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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