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Sample GSM2044296 Query DataSets for GSM2044296
Status Public on Apr 01, 2016
Title Liver Infected_Day 3 KO rep 2_experiment_2
Sample type RNA
 
Source name Mouse Liver_Infected_Day 3
Organism Mus musculus
Characteristics strain: B6 IFNAR-/-
genotype: IFNAR-/-
gender: Female
tissue: Liver
treatment: Infected_Day 3
experiment: 2
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 2
9371989056_A
Data processing The data were normalised using quantile normalisation with GeneSpring GX12.1
 
Submission date Jan 21, 2016
Last update date Apr 01, 2016
Contact name Krzysztof Potempa
E-mail(s) potempak@gmail.com
Organization name National Institute for Medical Research (NIMR)
Street address The Ridgeway
City London
ZIP/Postal code NW7 1AA
Country United Kingdom
 
Platform ID GPL6887
Series (1)
GSE77102 Analysis of transcriptional signatures in response to Listeria monocytogenes infection reveals temporal and strain dependent changes in interferon signalling

Data table header descriptions
ID_REF
VALUE quantile normalized

Data table
ID_REF VALUE
ILMN_2659724 -0.45830536
ILMN_2713160 -0.2657888
ILMN_1219601 -0.5068116
ILMN_1252621 -0.21360064
ILMN_2574839 -0.2657888
ILMN_3162407 -0.5998683
ILMN_2514723 -0.021175385
ILMN_2692952 -0.52151835
ILMN_1257952 -0.2657888
ILMN_1236559 -0.13835692
ILMN_2910076 -0.2657888
ILMN_1240428 -0.2657888
ILMN_2459211 -0.2657888
ILMN_2718462 0.047219753
ILMN_2882078 0.48266244
ILMN_2882079 -0.013085008
ILMN_2570659 -0.2657888
ILMN_2465544 -0.2657888
ILMN_2724039 -0.31180334
ILMN_2598594 -0.2657888

Total number of rows: 45281

Table truncated, full table size 1071 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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