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Sample GSM2124123 Query DataSets for GSM2124123
Status Public on Jun 01, 2016
Title BOXER_BI_175631_JOHNSON_52772
Sample type genomic
 
Source name whole blood
Organism Canis lupus familiaris
Characteristics breed: Boxer
status: DM-unaffected
age: 11 or older
Extracted molecule genomic DNA
Extraction protocol Qiagen QIAamp DNA blood midi kit
Label biotin
Label protocol Canine HD Whole-Genome Genotyping BeadChip using the Infinium HD Ultra Assay
 
Hybridization protocol Standard Illumina protocol for Infinium HD Beadchip
Scan protocol Two iScans with dual autoloaders
Data processing Illumina GenomeStudio Version 2011.1 with Genotyping Module 1.9.4
 
Submission date Apr 14, 2016
Last update date Jun 01, 2016
Contact name Kerstin Lindblad-Toh
Organization name Broad Institute
Department Vertebrate Genome Biology
Street address 715 Main Street
City Cambridge
State/province MA
ZIP/Postal code 02142
Country USA
 
Platform ID GPL17481
Series (1)
GSE80315 Boxer dataset for genome-wide association study of modifiers of risk of canine degenerative myelopathy in dogs homozygous for SOD1 mutation

Data table header descriptions
ID_REF
VALUE Genotype: AA,AB,BB,or NC (no call)
GC_SCORE
Theta
R
B_Allele_Freq
Log_R_Ratio

Data table
ID_REF VALUE GC_SCORE Theta R B_Allele_Freq Log_R_Ratio
BICF2P1205156 BB 0.8711 0.991 1.222 1.0000 -0.0009
BICF2P257668 AA 0.9370 0.035 1.233 0.0089 0.0203
BICF2S23649867 AA 0.7306 0.013 2.076 0.0000 -0.1299
BICF2P1177745 AA 0.9474 0.018 1.115 0.0055 -0.0283
BICF2P1177746 BB 0.9160 0.969 0.977 1.0000 -0.0372
BICF2G63056961 AB 0.9048 0.556 0.613 0.5545 0.3004
BICF2G630836929 AB 0.8623 0.529 1.263 0.5087 0.4343
BICF2G630605982 NC 0.0000 0.773 0.777 0.4618 0.2797
BICF2S23534680 AA 0.9228 0.025 1.028 0.0115 -0.2458
BICF2P465543 BB 0.6139 0.974 0.876 0.9869 0.1583
BICF2S23028099 BB 0.6955 0.901 0.905 1.0000 0.2453
BICF2P593727 BB 0.9127 0.958 1.084 1.0000 0.1065
BICF2P981791 BB 0.9238 0.980 1.128 0.9946 -0.0945
BICF2P1374661 BB 0.8267 0.975 0.793 0.9998 0.2199
BICF2P743218 BB 0.6395 0.990 1.249 0.9970 0.0447
BICF2G630776515 AB 0.7311 0.496 1.470 0.3872 0.2104
BICF2G630264297 BB 0.8988 0.975 0.826 0.9986 0.1756
BICF2P1148972 AA 0.9109 0.008 1.312 0.0000 0.0567
BICF2S23536272 AA 0.8932 0.006 1.266 0.0000 -0.0336
BICF2P1148977 AB 0.9211 0.522 1.569 0.5396 0.0383

Total number of rows: 173662

Table truncated, full table size 8776 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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