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GEO accession:
Sample GSM2124130
Query DataSets for GSM2124130
Status
Public on Jun 01, 2016
Title
BOXER_BI_9282_BROAD_9282
Sample type
genomic
Source name
whole blood
Organism
Canis lupus familiaris
Characteristics
breed: Boxer
status: DM-unaffected
age: 13.0
Extracted molecule
genomic DNA
Extraction protocol
Qiagen QIAamp DNA blood midi kit
Label
biotin
Label protocol
Canine HD Whole-Genome Genotyping BeadChip using the Infinium HD Ultra Assay
Hybridization protocol
Standard Illumina protocol for Infinium HD Beadchip
Scan protocol
Two iScans with dual autoloaders
Data processing
Illumina GenomeStudio Version 2011.1 with Genotyping Module 1.9.4
Submission date
Apr 14, 2016
Last update date
Jun 01, 2016
Contact name
Kerstin Lindblad-Toh
Organization name
Broad Institute
Department
Vertebrate Genome Biology
Street address
715 Main Street
City
Cambridge
State/province
MA
ZIP/Postal code
02142
Country
USA
Platform ID
GPL17481
Series (1)
GSE80315
Boxer dataset for genome-wide association study of modifiers of risk of canine degenerative myelopathy in dogs homozygous for SOD1 mutation
Data table header descriptions
ID_REF
VALUE
Genotype: AA,AB,BB,or NC (no call)
GC_SCORE
Theta
R
B_Allele_Freq
Log_R_Ratio
Data table
ID_REF
VALUE
GC_SCORE
Theta
R
B_Allele_Freq
Log_R_Ratio
BICF2P1205156
BB
0.8711
0.993
1.279
1.0000
0.0680
BICF2P257668
AA
0.9370
0.022
1.198
0.0000
-0.0163
BICF2S23649867
AA
0.7306
0.019
2.624
0.0072
0.2074
BICF2P1177745
AA
0.9474
0.022
1.273
0.0097
0.1605
BICF2P1177746
BB
0.9160
0.958
1.107
0.9900
0.1355
BICF2G63056961
AB
0.9048
0.501
0.364
0.4966
-0.4694
BICF2G630836929
BB
0.8623
0.978
0.749
0.9909
0.0454
BICF2G630605982
NC
0.0000
0.059
0.369
0.0000
0.4605
BICF2S23534680
AA
0.9228
0.012
1.169
0.0000
-0.0546
BICF2P465543
BB
0.6139
0.977
0.546
0.9917
-0.5247
BICF2S23028099
AB
0.6955
0.524
1.107
0.4877
0.4505
BICF2P593727
BB
0.9127
0.962
1.064
1.0000
0.0834
BICF2P981791
AA
0.9238
0.005
1.299
0.0000
0.1171
BICF2P1374661
AB
0.8267
0.469
0.736
0.5053
-0.2636
BICF2P743218
BB
0.6395
0.990
1.042
0.9975
-0.2163
BICF2G630776515
AA
0.7733
0.012
1.296
0.0000
0.2593
BICF2G630264297
AB
0.8988
0.536
0.552
0.5363
-0.6665
BICF2P1148972
AA
0.9109
0.010
1.337
0.0000
0.0835
BICF2S23536272
AA
0.8932
0.012
1.346
0.0054
0.0503
BICF2P1148977
AA
0.9211
0.027
1.445
0.0115
0.2000
Total number of rows:
173662
Table truncated, full table size
8772 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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