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Sample GSM2124132 Query DataSets for GSM2124132
Status Public on Jun 01, 2016
Title BOXER_BI_89068_JOHNSON_44368
Sample type genomic
 
Source name whole blood
Organism Canis lupus familiaris
Characteristics breed: Boxer
status: DM-affected
age: 10.5
Extracted molecule genomic DNA
Extraction protocol Qiagen QIAamp DNA blood midi kit
Label biotin
Label protocol Canine HD Whole-Genome Genotyping BeadChip using the Infinium HD Ultra Assay
 
Hybridization protocol Standard Illumina protocol for Infinium HD Beadchip
Scan protocol Two iScans with dual autoloaders
Data processing Illumina GenomeStudio Version 2011.1 with Genotyping Module 1.9.4
 
Submission date Apr 14, 2016
Last update date Jun 01, 2016
Contact name Kerstin Lindblad-Toh
Organization name Broad Institute
Department Vertebrate Genome Biology
Street address 715 Main Street
City Cambridge
State/province MA
ZIP/Postal code 02142
Country USA
 
Platform ID GPL17481
Series (1)
GSE80315 Boxer dataset for genome-wide association study of modifiers of risk of canine degenerative myelopathy in dogs homozygous for SOD1 mutation

Data table header descriptions
ID_REF
VALUE Genotype: AA,AB,BB,or NC (no call)
GC_SCORE
Theta
R
B_Allele_Freq
Log_R_Ratio

Data table
ID_REF VALUE GC_SCORE Theta R B_Allele_Freq Log_R_Ratio
BICF2P1205156 BB 0.8711 0.989 1.089 0.9996 -0.1688
BICF2P257668 AA 0.9370 0.030 1.133 0.0031 -0.1001
BICF2S23649867 AB 0.7306 0.344 2.430 0.4596 0.0448
BICF2P1177745 AA 0.9474 0.017 1.090 0.0041 -0.0600
BICF2P1177746 BB 0.9160 0.952 0.974 0.9837 -0.0526
BICF2G63056961 BB 0.9048 0.987 0.499 1.0000 0.1613
BICF2G630836929 BB 0.8623 0.980 0.662 0.9922 -0.1324
BICF2G630605982 NC 0.0000 0.052 0.369 0.0000 0.4780
BICF2S23534680 AA 0.9228 0.017 1.007 0.0020 -0.2721
BICF2P465543 BB 0.6139 0.979 0.779 0.9953 -0.0141
BICF2S23028099 BB 0.6955 0.899 0.630 1.0000 -0.2763
BICF2P593727 BB 0.9127 0.952 1.005 0.9960 -0.0089
BICF2P981791 AA 0.9238 0.012 1.118 0.0003 -0.1049
BICF2P1374661 BB 0.8267 0.963 0.507 0.9879 -0.4354
BICF2P743218 BB 0.6395 0.999 1.182 1.0000 -0.0260
BICF2G630776515 BB 0.7733 0.987 1.004 0.9959 -0.2318
BICF2G630264297 AB 0.5148 0.727 1.045 0.7371 0.3621
BICF2P1148972 AA 0.9109 0.007 1.118 0.0000 -0.1728
BICF2S23536272 AA 0.8932 0.019 0.896 0.0115 -0.5424
BICF2P1148977 AA 0.9211 0.023 1.285 0.0072 0.0338

Total number of rows: 173662

Table truncated, full table size 8773 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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