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Sample GSM2124134 Query DataSets for GSM2124134
Status Public on Jun 01, 2016
Title BOXER_BI_89077_JOHNSON_54758
Sample type genomic
 
Source name whole blood
Organism Canis lupus familiaris
Characteristics breed: Boxer
status: DM-affected
age: 7.0
Extracted molecule genomic DNA
Extraction protocol Qiagen QIAamp DNA blood midi kit
Label biotin
Label protocol Canine HD Whole-Genome Genotyping BeadChip using the Infinium HD Ultra Assay
 
Hybridization protocol Standard Illumina protocol for Infinium HD Beadchip
Scan protocol Two iScans with dual autoloaders
Data processing Illumina GenomeStudio Version 2011.1 with Genotyping Module 1.9.4
 
Submission date Apr 14, 2016
Last update date Jun 01, 2016
Contact name Kerstin Lindblad-Toh
Organization name Broad Institute
Department Vertebrate Genome Biology
Street address 715 Main Street
City Cambridge
State/province MA
ZIP/Postal code 02142
Country USA
 
Platform ID GPL17481
Series (1)
GSE80315 Boxer dataset for genome-wide association study of modifiers of risk of canine degenerative myelopathy in dogs homozygous for SOD1 mutation

Data table header descriptions
ID_REF
VALUE Genotype: AA,AB,BB,or NC (no call)
GC_SCORE
Theta
R
B_Allele_Freq
Log_R_Ratio

Data table
ID_REF VALUE GC_SCORE Theta R B_Allele_Freq Log_R_Ratio
BICF2P1205156 BB 0.8711 0.988 1.093 0.9986 -0.1648
BICF2P257668 AA 0.9370 0.029 1.064 0.0023 -0.1900
BICF2S23649867 AA 0.7306 0.022 2.497 0.0106 0.1357
BICF2P1177745 AA 0.9474 0.019 0.996 0.0064 -0.1918
BICF2P1177746 BB 0.9160 0.964 0.865 0.9976 -0.2162
BICF2G63056961 BB 0.9048 0.983 0.462 1.0000 0.0481
BICF2G630836929 BB 0.8623 0.991 0.585 1.0000 -0.2990
BICF2G630605982 NC 0.0000 0.938 0.825 0.8342 0.1069
BICF2S23534680 AA 0.9228 0.016 1.074 0.0015 -0.1792
BICF2P465543 BB 0.6139 0.991 0.745 1.0000 -0.0832
BICF2S23028099 BB 0.6955 0.916 0.695 1.0000 -0.1315
BICF2P593727 BB 0.9127 0.963 0.950 1.0000 -0.0808
BICF2P981791 AB 0.9238 0.501 1.353 0.4995 -0.1426
BICF2P1374661 AB 0.8267 0.524 0.725 0.5586 -0.2497
BICF2P743218 BB 0.6395 1.000 1.175 1.0000 -0.0340
BICF2G630776515 BB 0.7733 0.973 0.952 0.9761 -0.3164
BICF2G630264297 AB 0.8231 0.323 1.218 0.3167 0.5036
BICF2P1148972 AA 0.9109 0.014 1.692 0.0043 0.4218
BICF2S23536272 AA 0.8932 0.005 1.298 0.0000 0.0036
BICF2P1148977 AA 0.9211 0.017 1.210 0.0001 -0.0481

Total number of rows: 173662

Table truncated, full table size 8778 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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