|
| Status |
Public on Nov 18, 2016 |
| Title |
spleen-PBS-24h-rep3 |
| Sample type |
RNA |
| |
|
| Source name |
mouse,mock-infection,24h, spleen
|
| Organism |
Mus musculus |
| Characteristics |
tissue: spleen
infectious agent: mock (PBS)
hours post infection: 24
gender: female
strain: BALB/c
age: 10-12weeks
|
| Treatment protocol |
tain vein fungal infection
|
| Growth protocol |
Candida albicans stationary phase growth in YPD
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA isolation kit, Qiagen GmbH, Hilden, Germany
|
| Label |
Alexa 555 streptavidin (Invitrogen / Life technologies)
|
| Label protocol |
Whole-Genome Gene Expression Direct Hybridization (DirHyb) Assay, Illumina
|
| |
|
| Hybridization protocol |
Whole-Genome Gene Expression Direct Hybridization (DirHyb) Assay, Illumina
|
| Scan protocol |
iScan Control Software
|
| Description |
donor_18
Sample name: 9993942008_H
|
| Data processing |
Raw data was pre-processed using the lumi package for R, including background correction (bgAdjust) and subsequent data normalization using variance stabilization transformation and quantile normalization.
|
| |
|
| Submission date |
Jun 23, 2016 |
| Last update date |
Nov 18, 2016 |
| Contact name |
Ilse Denise Jacobsen |
| E-mail(s) |
ilse.jacobsen@hki-jena.de
|
| Phone |
+49 3641 5321223
|
| Organization name |
Leibniz Institute for Natural Product Research and Infection Biology
|
| Lab |
Microbial Immunology
|
| Street address |
Beutenbergstr. 11a
|
| City |
Jena |
| ZIP/Postal code |
07745 |
| Country |
Germany |
| |
|
| Platform ID |
GPL6885 |
| Series (2) |
| GSE83680 |
Combined transcriptional profiling during systemic candidiasis reveals organ-specific host-pathogen interactions [mouse tissues 12,24,72 h] |
| GSE83682 |
Combined transcriptional profiling during systemic candidiasis reveals organ-specific host-pathogen interactions |
|
