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Sample GSM2322083 Query DataSets for GSM2322083
Status Public on Jun 09, 2017
Title genomic DNA from purified CD19+ B cells TJITB6
Sample type genomic
 
Source name healthy control sample 2
Organism Homo sapiens
Characteristics disease state: Healthy Control
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted from purified CD19+ B cells using Qiagen DNeasy Kit according to standard instructions
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina HumanMethylation450 BeadChip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description Positively selected CD19+ B cells from healthy individual
Data processing BeadStudio software v3.2
 
Submission date Sep 19, 2016
Last update date Jun 10, 2017
Contact name Antonio Julià
E-mail(s) toni.julia@vhir.org
Phone +34 934029082
Organization name Vall d'Hebron Hospital Research Institute
Department Rheumatology Research Group
Lab Rheumatology Research Group
Street address c/ Baldiri Reixac nº15
City Barcelona
State/province Barcelona
ZIP/Postal code 08028
Country Spain
 
Platform ID GPL13534
Series (1)
GSE87095 DNA methylation analysis of B cells in Rheumatoid Arthritis

Data table header descriptions
ID_REF
VALUE Average Beta
TJITB6.Detection.Pval

Data table
ID_REF VALUE TJITB6.Detection.Pval
cg00000029 0.6711 0
cg00000108 0.9548 0
cg00000109 0.8769 0
cg00000165 0.211 0
cg00000236 0.8798 0
cg00000289 0.6585 0
cg00000292 0.9119 0
cg00000321 0.2983 0
cg00000363 0.3733 0
cg00000622 0.0144 0
cg00000658 NULL 0
cg00000714 0.2386 0
cg00000721 0.9528 0
cg00000734 0.0507 0
cg00000769 0.044 0
cg00000807 0.9139 0
cg00000884 0.8619 0
cg00000905 0.0626 0
cg00000924 0.4941 0
cg00000948 0.8752 0

Total number of rows: 485512

Table truncated, full table size 9441 Kbytes.




Supplementary file Size Download File type/resource
GSM2322083_TJITB6_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM2322083_TJITB6_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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