|
| Status |
Public on Sep 30, 2017 |
| Title |
knu-1_rep3 |
| Sample type |
RNA |
| |
|
| Source name |
knu-1
|
| Organism |
Arabidopsis thaliana |
| Characteristics |
genotype/variation: knu-1
phenotype: the knu-1 flower develops bulged carpels with additional whorls of stamens and carpels inside
tissue: inflorescence
|
| Treatment protocol |
No treatment applied
|
| Growth protocol |
The seeds of the indicated genotype were planted on soil, and grown at 22°C under continuous light conditions. The inflorescence with flower buds earlier than stage 10 was sampled from knu-1 and crc-1 knu-1.
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Total RNA was extracted using the RNeasy Mini kit (Qiagen Inc., Valencia, CA, USA) and the RNAprotect reagent (Qiagen) and DNA was removed by on-column DNase digestion with the RNase-Free DNase set (Qiagen).
|
| Label |
Cy3
|
| Label protocol |
Labeling was performed following NimbleGen standard operating protocol. See www.nimblegen.com.
|
| |
|
| Hybridization protocol |
Hybridization was performed following NimbleGen standard operating protocol. See www.nimblegen.com.
|
| Scan protocol |
Scanning was performed following NimbleGen standard operating protocol. See www.nimblegen.com.
|
| Data processing |
The raw data (.pair file) was subjected to RMA (Robust Multi-Array Analysis; Irizarry et al. Biostatistics 4(2):249), quantile normalization (Bolstad et al. Bioinformatics 19(2):185), and background correction as implemented in the NimbleScan software package, version 2.4.27 (Roche NimbleGen, Inc.).
|
| |
|
| Submission date |
Oct 20, 2016 |
| Last update date |
Sep 30, 2017 |
| Contact name |
Yifeng XU |
| E-mail(s) |
yifeng@tll.org.sg
|
| Phone |
68727742
|
| Organization name |
Temasek Life Sciences Laboratory
|
| Street address |
1 Research Link
|
| City |
Singapore |
| State/province |
- |
| ZIP/Postal code |
117604 |
| Country |
Singapore |
| |
|
| Platform ID |
GPL22590 |
| Series (1) |
| GSE88969 |
Gene expression analysis of the inflorescence of knu-1 and crc-1 knu-1 |
|
