|
| Status |
Public on Jan 14, 2018 |
| Title |
PTPR, B, sample 851 [reference set] |
| Sample type |
genomic |
| |
|
| Source name |
brain tumor
|
| Organism |
Homo sapiens |
| Characteristics |
methylation class: PTPR, B
material: FFPE
|
| Treatment protocol |
Extraction of high molecular weight DNA from frozen tumor samples was carried out by use of a salting-out method or by ultracentrifugation over cesium chloride.
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Illumina protocol.
|
| Label |
biotin/DNP
|
| Label protocol |
Illumina protocol.
|
| |
|
| Hybridization protocol |
Illumina protocol.
|
| Scan protocol |
Illumina iScan System according to the manufacturer's protocol
|
| Description |
Methylation data from brain tumor sample.
|
| Data processing |
Bioconductor (Version 3.3) package minifi (Version 1.18) using function 'preprocessIllumina'
Average beta
|
| |
|
| Submission date |
Nov 25, 2016 |
| Last update date |
Jan 23, 2024 |
| Contact name |
Martin Sill |
| E-mail(s) |
m.sill@dkfz.de
|
| Organization name |
DKFZ
|
| Department |
Division of Pediatric Neurooncology
|
| Street address |
Im Neuenheimer Feld 280
|
| City |
Heidelberg |
| ZIP/Postal code |
69120 |
| Country |
Germany |
| |
|
| Platform ID |
GPL13534 |
| Series (2) |
| GSE90496 |
DNA methylation-based classification of human central nervous system tumors [reference set] |
| GSE109381 |
DNA methylation-based classification of human central nervous system tumors |
|
| Relations |
| Reanalyzed by |
GSE254031 |
