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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Jul 19, 2024 |
| Title |
Papillary Tumor of the Pineal Region: analysis of DNA methylation profiles and clinical outcomes in 76 cases |
| Organism |
Homo sapiens |
| Experiment type |
Methylation profiling by genome tiling array
Third-party reanalysis
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| Summary |
Genomewide DNA methylation array profiling and analysis of 76 new and public published Papillary Tumor of the Pineal Region (PTPR). The methylation idat profiles of 39 newly profiled tumors were provided here.
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| Overall design |
Bisulfite converted genomic DNA extracted from tumor samples was hybridized to Illumina Infinium EPIC and EPIC V2 Human DNA Methylation Beadchips
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| Contributor(s) |
Wu Z, Aldape K |
| Citation(s) |
39014393 |
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| Submission date |
Jan 23, 2024 |
| Last update date |
Aug 09, 2024 |
| Contact name |
Zhichao Wu |
| Organization name |
NIH/NCI
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| Department |
Center for Cancer Research
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| Lab |
Laboratory of Pathology
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| Street address |
BG 10 RM 4A31 MSC 1500, 10 CENTER DR
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| City |
BETHESDA |
| State/province |
MD |
| ZIP/Postal code |
20892 |
| Country |
USA |
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| Platforms (2) |
| GPL21145 |
Infinium MethylationEPIC |
| GPL33022 |
Illumina Infinium MethylationEPIC version 2 |
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| Samples (39)
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| GSM8032094 |
PTPR, BA83 |
| GSM8032095 |
PTPR, BT01 |
| GSM8032096 |
PTPR, BX20 |
| GSM8032097 |
PTPR, CB63 |
| GSM8032098 |
PTPR, CF35 |
| GSM8032099 |
PTPR, CJ17 |
| GSM8032100 |
PTPR, CN35 |
| GSM8032101 |
PTPR, DB32 |
| GSM8032102 |
PTPR, DKFZ_PTPR1 |
| GSM8032103 |
PTPR, DKFZ_PTPR2 |
| GSM8032104 |
PTPR, DKFZ_PTPR3 |
| GSM8032105 |
PTPR, DP18 |
| GSM8032106 |
PTPR, DU68 |
| GSM8032107 |
PTPR, DW29 |
| GSM8032108 |
PTPR, EP50 |
| GSM8032109 |
PTPR, ER46 |
| GSM8032110 |
PTPR, MT1322 |
| GSM8032111 |
PTPR, MT1323 |
| GSM8032112 |
PTPR, MT1324 |
| GSM8032113 |
PTPR, MT1327 |
| GSM8032114 |
PTPR, MT1328 |
| GSM8032115 |
PTPR, AR17 |
| GSM8032116 |
PTPR, U934 |
| GSM8032117 |
PTPR, W698 |
| GSM8032118 |
PTPR, Y193 |
| GSM8032119 |
PTPR, Y253 |
| GSM8032120 |
PTPR, Y322 |
| GSM8032121 |
PTPR, Y327 |
| GSM8032122 |
PTPR, Y869 |
| GSM8032123 |
PTPR, Y983 |
| GSM8032124 |
PTPR, Z799 |
| GSM8032125 |
PTPR, Z841 |
| GSM8032126 |
PTPR, Z972 |
| GSM8032127 |
PTPR, FA62 |
| GSM8032128 |
PTPR, MX1347 |
| GSM8032129 |
PTPR, MX1348 |
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| Relations |
| Reanalysis of |
GSM2402990 |
| Reanalysis of |
GSM2403199 |
| Reanalysis of |
GSM2403704 |
| Reanalysis of |
GSM2403920 |
| Reanalysis of |
GSM2403921 |
| Reanalysis of |
GSM2403922 |
| Reanalysis of |
GSM2403923 |
| Reanalysis of |
GSM2403924 |
| Reanalysis of |
GSM2403925 |
| Reanalysis of |
GSM2403926 |
| Reanalysis of |
GSM2403927 |
| Reanalysis of |
GSM2403928 |
| Reanalysis of |
GSM2403929 |
| Reanalysis of |
GSM2403930 |
| Reanalysis of |
GSM2403931 |
| Reanalysis of |
GSM2403932 |
| Reanalysis of |
GSM2403933 |
| Reanalysis of |
GSM2403934 |
| Reanalysis of |
GSM2404011 |
| Reanalysis of |
GSM2404440 |
| Reanalysis of |
GSM2404522 |
| Reanalysis of |
GSM2404629 |
| Reanalysis of |
GSM2404762 |
| Reanalysis of |
GSM2405018 |
| Reanalysis of |
GSM2405019 |
| Reanalysis of |
GSM2405020 |
| Reanalysis of |
GSM2405083 |
| Reanalysis of |
GSM2405366 |
| Reanalysis of |
GSM2405367 |
| Reanalysis of |
GSM2405534 |
| Reanalysis of |
GSM2940847 |
| Reanalysis of |
GSM2941194 |
| Reanalysis of |
GSM6629398 |
| Reanalysis of |
GSM6629574 |
| Reanalysis of |
GSM6629799 |
| Reanalysis of |
GSM7017586 |
| Reanalysis of |
GSM7017630 |
| BioProject |
PRJNA1068152 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE254031_RAW.tar |
710.4 Mb |
(http)(custom) |
TAR (of IDAT) |
| GSE254031_betas.tsv.gz |
213.3 Mb |
(ftp)(http) |
TSV |
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