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Sample GSM240499 Query DataSets for GSM240499
Status Public on Nov 01, 2007
Title PB_DON102
Sample type RNA
 
Source name Peripheral Blood Mononuclear Cells
Organism Homo sapiens
Characteristics Peripheral Blood Mononuclear Cells
Unknown Age and Gender
Extracted molecule total RNA
Extraction protocol Total RNA extracted using TRIzol reagent (Invitrogen, Carlsbad, CA)according to manufacturer's protocol.
Label Biotin
Label protocol Target was labeled with Enzo BioArray High Yield RNA Trascript Labeling Kit (Enzo Life TEchnologies, Farmingdale, NY) according to manufacturer's protocol.
 
Hybridization protocol Hybridization was performed according to Affymetrix protocol.
Scan protocol Arrays were scanned according to Affymetrix protocol.
Description n/a
Data processing .DAT files were generated using GCOS 1.2.1 software (Affymetrix). CEL files were generated using MAS 5.0 softare (Affymetrix) with target signals for probe sets scaled to 500. Log2 expression values for individual probe sets were generated from .CEL files via robust multi-array average (gcRMA).
 
Submission date Oct 30, 2007
Last update date Nov 14, 2018
Contact name Derek L Stirewalt
E-mail(s) dstirewa@fhcrc.org
Organization name Fred Hutchinson Cancer Research Center
Department Clinical Research Division
Lab Stirewalt Lab
Street address 1100 Fairview Ave N, D5-112
City Seattle
State/province WA
ZIP/Postal code 98109
Country USA
 
Platform ID GPL96
Series (1)
GSE9476 Abnormal Expression Changes in AML
Relations
Reanalyzed by GSM915770
Reanalyzed by GSE122505

Data table header descriptions
ID_REF
VALUE Log2 Expression value obtained from gcRMA analyses of .CEL file

Data table
ID_REF VALUE
1007_s_at 3.148728499
1053_at 6.251315526
117_at 9.934072297
121_at 7.243801434
1255_g_at 2.274711824
1294_at 8.0265622
1316_at 4.706762644
1320_at 2.799701661
1405_i_at 10.66656149
1431_at 3.213320676
1438_at 2.393148956
1487_at 5.7827543
1494_f_at 2.985714866
1598_g_at 6.490721637
160020_at 4.700641099
1729_at 7.546899929
177_at 3.317234747
1773_at 2.302742311
179_at 6.645940318
1861_at 1.632141757

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.




Supplementary file Size Download File type/resource
GSM240499.CEL.gz 3.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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