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Sample GSM240869 Query DataSets for GSM240869
Status Public on Dec 26, 2008
Title 2635AvsRef
Sample type genomic
 
Channel 1
Source name Strain: 2635A
Organism Burkholderia pseudomallei
Characteristics Strain: 2635A
Extracted molecule genomic DNA
Extraction protocol genomic DNA extraction
Label Cy3
Label protocol Test genomic DNA (2ug) was fluorescently labeled with Cy3-dCTP using nick-translation.
 
Channel 2
Source name Reference: Strain K96243
Organism Burkholderia pseudomallei K96243
Characteristics Strain: K96243
Extracted molecule genomic DNA
Extraction protocol genomic DNA extraction
Label Cy5
Label protocol Reference genomic DNA (2ug) was fluorescently labeled with Cy5-dCTP using nick-translation.
 
 
Hybridization protocol J. David Gladstone Institutes Genomic Core Laboratory SOP
Scan protocol J. David Gladstone Institutes Genomic Core Laboratory SOP
Description Series of 93 B. pseudomallei strains
Data processing GeneData Expressionist
 
Submission date Nov 01, 2007
Last update date Aug 14, 2011
Contact name Sim Siew Hoon
E-mail(s) ssiewhoo@dso.org.sg
Phone 65-64857253
Fax 65-64857262
URL http://www.dso.org.sg
Organization name DSO National Laboratories
Department MCB
Lab Bacteriology
Street address 27 Medical Drive
City Singapore
ZIP/Postal code 117510
Country Singapore
 
Platform ID GPL6073
Series (1)
GSE9491 Comparative genomic analysis of 93 Bp strains using K96243 as the reference

Data table header descriptions
ID_REF
VALUE Normalised log ratios; data normalised using a LOWESS protocol; probes exhibiting a missing value score across >40% of samples and probes whose genomic loci were redundant with other probes were removed.

Data table
ID_REF VALUE
3411402 -0.127537976
3140602 -0.152891215
3140402 0.383825776
324503 0.193861351
3140302 0.291862674
2843102 -0.577139282
162503 0.061526966
2919502 0.640483807
2789402 -0.273005917
243703 1.448605549
2789302 -0.139563659
2789202 -0.014649425
2789102 -0.047827201
2919202 0.747196069
2919102 0.546478537
185303 0.325760828
2815602 0.172942689
243803 -0.380758066
3038302 0.080036124
324603 -0.443500431

Total number of rows: 5369

Table truncated, full table size 105 Kbytes.




Supplementary file Size Download File type/resource
GSM240869.gpr.gz 1.3 Mb (ftp)(http) GPR
Processed data included within Sample table

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