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| Status |
Public on Jan 01, 2008 |
| Title |
DSO/GIS lab Full_Burkholderia_pseudomallei_Genome v2 |
| Technology type |
spotted DNA/cDNA |
| Distribution |
non-commercial |
| Organism |
Burkholderia pseudomallei K96243 |
| Manufacturer |
DSO/GIS lab |
| Manufacture protocol |
as described in DSO/GIS Labs manual
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| |
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| Description |
spotted DNA
This set includes 8836 PCR probes (30 mers) designed in-house using Primer 3
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| |
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| Contributor(s) |
Tan P |
| Submission date |
Nov 01, 2007 |
| Last update date |
Jan 01, 2008 |
| Contact name |
Sim Siew Hoon |
| E-mail(s) |
ssiewhoo@dso.org.sg
|
| Phone |
65-64857253
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| Fax |
65-64857262
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| URL |
http://www.dso.org.sg
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| Organization name |
DSO National Laboratories
|
| Department |
MCB
|
| Lab |
Bacteriology
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| Street address |
27 Medical Drive
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| City |
Singapore |
| ZIP/Postal code |
117510 |
| Country |
Singapore |
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| Samples (93)
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GSM240850, GSM240851, GSM240852, GSM240853, GSM240854, GSM240855
GSM240856, GSM240857, GSM240858, GSM240859, GSM240860, GSM240861, GSM240862, GSM240863, GSM240864, GSM240865, GSM240866, GSM240867, GSM240868, GSM240869, GSM240870, GSM240871, GSM240872, GSM240873, GSM240874, GSM240875, GSM240876, GSM240877, GSM240878, GSM240879, GSM240880, GSM240881, GSM240882, GSM240883, GSM240884, GSM240885, GSM240886, GSM240887, GSM240888, GSM240889, GSM240890, GSM240891, GSM240892, GSM240893, GSM240894, GSM240895, GSM240896, GSM240897, GSM240898, GSM240899, GSM240900, GSM240901, GSM240902, GSM240903, GSM240904, GSM240905, GSM240906, GSM240907, GSM240908, GSM240909, GSM240910, GSM240911, GSM240912, GSM240913, GSM240914, GSM240915, GSM240916, GSM240917, GSM240918, GSM240919, GSM240920, GSM240921, GSM240922, GSM240923, GSM240924, GSM240925, GSM240926, GSM240927, GSM240928, GSM240929, GSM240930, GSM240931, GSM240932, GSM240933, GSM240934, GSM240935, GSM240936, GSM240937, GSM240938, GSM240939, GSM240940, GSM240941, GSM240942
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| Series (1) |
| GSE9491 |
Comparative genomic analysis of 93 Bp strains using K96243 as the reference |
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| Data table header descriptions |
| ID |
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| RANGE_GB |
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| RANGE_START |
start coordinates of the gene in the genbank file |
| RANGE_END |
end coordinates of the gene in the genbank file |
| RANGE_STRAND |
strand information of the gene in the genbank file |
| GENOME_ACC |
Genbank files that contains the genome |
| ORF |
Gene identity from genbank file |
| GENE_NAME |
descriptive name of the gene |
| SPOT_ID |
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| Data table |
| ID |
RANGE_GB |
RANGE_START |
RANGE_END |
RANGE_STRAND |
GENOME_ACC |
ORF |
GENE_NAME |
SPOT_ID |
| 3411402 |
BX571965.1 |
1 |
1116 |
- |
BX571965.1 |
BPSL0001 |
conserved hypothetical protein |
|
| 3140602 |
BX571965.1 |
1161 |
2375 |
- |
BX571965.1 |
BPSL0002 |
putative membrane protein |
|
| 2843302 |
BX571965.1 |
3114 |
5168 |
- |
BX571965.1 |
BPSL0003 |
conserved hypothetical protein |
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| 3140402 |
BX571965.1 |
3114 |
5168 |
- |
BX571965.1 |
BPSL0003 |
conserved hypothetical protein |
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| 324503 |
BX571965.1 |
5488 |
5766 |
+ |
BX571965.1 |
BPSL0004 |
DNA-binding protein HU-alpha |
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| 3140302 |
BX571965.1 |
5869 |
7209 |
- |
BX571965.1 |
BPSL0005 |
putative cobalamin synthesis protein/P47K |
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| 2843202 |
BX571965.1 |
5869 |
7209 |
- |
BX571965.1 |
BPSL0005 |
putative cobalamin synthesis protein/P47K |
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| 3140202 |
BX571965.1 |
7528 |
8013 |
- |
BX571965.1 |
BPSL0006 |
putative exported protein |
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| 2843102 |
BX571965.1 |
7528 |
8013 |
- |
BX571965.1 |
BPSL0006 |
putative exported protein |
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| 2843002 |
BX571965.1 |
8395 |
10668 |
+ |
BX571965.1 |
BPSL0007 |
general secretory pathway protein D |
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| 162503 |
BX571965.1 |
8395 |
10668 |
+ |
BX571965.1 |
BPSL0007 |
general secretory pathway protein D |
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| 2919502 |
BX571965.1 |
10665 |
12158 |
+ |
BX571965.1 |
BPSL0008 |
general secretory pathway protein E |
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| 2919602 |
BX571965.1 |
10665 |
12158 |
+ |
BX571965.1 |
BPSL0008 |
general secretory pathway protein E |
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| 2919402 |
BX571965.1 |
12163 |
13380 |
+ |
BX571965.1 |
BPSL0009 |
general secretory pathway protein F |
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| 2789402 |
BX571965.1 |
12163 |
13380 |
+ |
BX571965.1 |
BPSL0009 |
general secretory pathway protein F |
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| 243703 |
BX571965.1 |
13452 |
13862 |
- |
BX571965.1 |
BPSL0010 |
putative general secretory pathway protein |
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| 2789302 |
BX571965.1 |
14010 |
14462 |
+ |
BX571965.1 |
BPSL0011 |
general secretory pathway protein G |
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| 2919302 |
BX571965.1 |
14010 |
14462 |
+ |
BX571965.1 |
BPSL0011 |
general secretory pathway protein G |
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| 2789202 |
BX571965.1 |
14617 |
15096 |
+ |
BX571965.1 |
BPSL0012 |
general secretory pathway protein H |
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| 2789102 |
BX571965.1 |
15099 |
15503 |
+ |
BX571965.1 |
BPSL0013 |
general secretory pathway protein I |
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Total number of rows: 8916
Table truncated, full table size 761 Kbytes.
| Supplementary data files not provided |
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