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Sample GSM240870 Query DataSets for GSM240870
Status Public on Dec 26, 2008
Title 2644AvsRef
Sample type genomic
 
Channel 1
Source name Strain: 2644A
Organism Burkholderia pseudomallei
Characteristics Strain: 2644A
Extracted molecule genomic DNA
Extraction protocol genomic DNA extraction
Label Cy3
Label protocol Test genomic DNA (2ug) was fluorescently labeled with Cy3-dCTP using nick-translation.
 
Channel 2
Source name Reference: Strain K96243
Organism Burkholderia pseudomallei K96243
Characteristics Strain: K96243
Extracted molecule genomic DNA
Extraction protocol genomic DNA extraction
Label Cy5
Label protocol Reference genomic DNA (2ug) was fluorescently labeled with Cy5-dCTP using nick-translation.
 
 
Hybridization protocol J. David Gladstone Institutes Genomic Core Laboratory SOP
Scan protocol J. David Gladstone Institutes Genomic Core Laboratory SOP
Description Series of 93 B. pseudomallei strains
Data processing GeneData Expressionist
 
Submission date Nov 01, 2007
Last update date Aug 14, 2011
Contact name Sim Siew Hoon
E-mail(s) ssiewhoo@dso.org.sg
Phone 65-64857253
Fax 65-64857262
URL http://www.dso.org.sg
Organization name DSO National Laboratories
Department MCB
Lab Bacteriology
Street address 27 Medical Drive
City Singapore
ZIP/Postal code 117510
Country Singapore
 
Platform ID GPL6073
Series (1)
GSE9491 Comparative genomic analysis of 93 Bp strains using K96243 as the reference

Data table header descriptions
ID_REF
VALUE Normalised log ratios; data normalised using a LOWESS protocol; probes exhibiting a missing value score across >40% of samples and probes whose genomic loci were redundant with other probes were removed.

Data table
ID_REF VALUE
3411402 -0.483857064
3140602 -0.124522399
3140402 0.240869584
324503 -0.08146198
3140302 1.554801338
2843102 -0.162561277
162503 0.092085221
2919502 1.131468879
2789402 -0.238191205
243703 1.82212217
2789302 -0.103312247
2789202 0.097515794
2789102 -0.016445541
2919202 0.193337295
2919102 1.51749881
185303 0.051456644
2815602 -0.012347549
243803 -0.493275055
3038302 0.121275741
324603 -0.352580747

Total number of rows: 5369

Table truncated, full table size 105 Kbytes.




Supplementary file Size Download File type/resource
GSM240870.gpr.gz 1.4 Mb (ftp)(http) GPR
Processed data included within Sample table

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