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Sample GSM240877 Query DataSets for GSM240877
Status Public on Dec 26, 2008
Title 2694AvsRef
Sample type genomic
 
Channel 1
Source name Strain: 2694A
Organism Burkholderia pseudomallei
Characteristics Strain: 2694A
Extracted molecule genomic DNA
Extraction protocol genomic DNA extraction
Label Cy3
Label protocol Test genomic DNA (2ug) was fluorescently labeled with Cy3-dCTP using nick-translation.
 
Channel 2
Source name Reference: Strain K96243
Organism Burkholderia pseudomallei K96243
Characteristics Strain: K96243
Extracted molecule genomic DNA
Extraction protocol genomic DNA extraction
Label Cy5
Label protocol Reference genomic DNA (2ug) was fluorescently labeled with Cy5-dCTP using nick-translation.
 
 
Hybridization protocol J. David Gladstone Institutes Genomic Core Laboratory SOP
Scan protocol J. David Gladstone Institutes Genomic Core Laboratory SOP
Description Series of 93 B. pseudomallei strains
Data processing GeneData Expressionist
 
Submission date Nov 01, 2007
Last update date Aug 14, 2011
Contact name Sim Siew Hoon
E-mail(s) ssiewhoo@dso.org.sg
Phone 65-64857253
Fax 65-64857262
URL http://www.dso.org.sg
Organization name DSO National Laboratories
Department MCB
Lab Bacteriology
Street address 27 Medical Drive
City Singapore
ZIP/Postal code 117510
Country Singapore
 
Platform ID GPL6073
Series (1)
GSE9491 Comparative genomic analysis of 93 Bp strains using K96243 as the reference

Data table header descriptions
ID_REF
VALUE Normalised log ratios; data normalised using a LOWESS protocol; probes exhibiting a missing value score across >40% of samples and probes whose genomic loci were redundant with other probes were removed.

Data table
ID_REF VALUE
3411402 0.052246028
3140602 -0.005559826
3140402 -0.013783086
324503 -0.013744289
3140302 0.082061458
2843102 -0.067265965
162503 0.081014653
2919502 0.092100622
2789402 -0.202467826
243703 1.548639589
2789302 -0.071929056
2789202 -0.000198087
2789102 -0.005984669
2919202 0.148063538
2919102 0.114884753
185303 -0.244715329
2815602 0.041438544
243803 0.149679389
3038302 -0.106632652
324603 -0.181317082

Total number of rows: 5369

Table truncated, full table size 105 Kbytes.




Supplementary file Size Download File type/resource
GSM240877.gpr.gz 1.3 Mb (ftp)(http) GPR
Processed data included within Sample table

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