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Sample GSM240878 Query DataSets for GSM240878
Status Public on Dec 26, 2008
Title 2747AvsRef
Sample type genomic
 
Channel 1
Source name Strain: 2747A
Organism Burkholderia pseudomallei
Characteristics Strain: 2747A
Extracted molecule genomic DNA
Extraction protocol genomic DNA extraction
Label Cy3
Label protocol Test genomic DNA (2ug) was fluorescently labeled with Cy3-dCTP using nick-translation.
 
Channel 2
Source name Reference: Strain K96243
Organism Burkholderia pseudomallei K96243
Characteristics Strain: K96243
Extracted molecule genomic DNA
Extraction protocol genomic DNA extraction
Label Cy5
Label protocol Reference genomic DNA (2ug) was fluorescently labeled with Cy5-dCTP using nick-translation.
 
 
Hybridization protocol J. David Gladstone Institutes Genomic Core Laboratory SOP
Scan protocol J. David Gladstone Institutes Genomic Core Laboratory SOP
Description Series of 93 B. pseudomallei strains
Data processing GeneData Expressionist
 
Submission date Nov 01, 2007
Last update date Aug 14, 2011
Contact name Sim Siew Hoon
E-mail(s) ssiewhoo@dso.org.sg
Phone 65-64857253
Fax 65-64857262
URL http://www.dso.org.sg
Organization name DSO National Laboratories
Department MCB
Lab Bacteriology
Street address 27 Medical Drive
City Singapore
ZIP/Postal code 117510
Country Singapore
 
Platform ID GPL6073
Series (1)
GSE9491 Comparative genomic analysis of 93 Bp strains using K96243 as the reference

Data table header descriptions
ID_REF
VALUE Normalised log ratios; data normalised using a LOWESS protocol; probes exhibiting a missing value score across >40% of samples and probes whose genomic loci were redundant with other probes were removed.

Data table
ID_REF VALUE
3411402 -0.038768979
3140602 -0.323670971
3140402 -0.011578788
324503 -0.050858691
3140302 0.002248328
2843102 -0.052713781
162503 0.208882074
2919502 0.081748726
2789402 -0.355764341
243703 2.095804428
2789302 -0.018739247
2789202 -0.017477072
2789102 -0.031086497
2919202 0.31294257
2919102 0.140580305
185303 -0.114115112
2815602 0.091770145
243803 0.096112669
3038302 -0.121172236
324603 -0.06056468

Total number of rows: 5369

Table truncated, full table size 105 Kbytes.




Supplementary file Size Download File type/resource
GSM240878.gpr.gz 1.4 Mb (ftp)(http) GPR
Processed data included within Sample table

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