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Sample GSM240925 Query DataSets for GSM240925
Status Public on Dec 26, 2008
Title 0-D10468vsRef
Sample type genomic
 
Channel 1
Source name Strain: 0-D10468
Organism Burkholderia pseudomallei
Characteristics Strain: 0-D10468
Extracted molecule genomic DNA
Extraction protocol genomic DNA extraction
Label Cy3
Label protocol Test genomic DNA (2ug) was fluorescently labeled with Cy3-dCTP using nick-translation.
 
Channel 2
Source name Reference: Strain K96243
Organism Burkholderia pseudomallei K96243
Characteristics Strain: K96243
Extracted molecule genomic DNA
Extraction protocol genomic DNA extraction
Label Cy5
Label protocol Reference genomic DNA (2ug) was fluorescently labeled with Cy5-dCTP using nick-translation.
 
 
Hybridization protocol J. David Gladstone Institutes Genomic Core Laboratory SOP
Scan protocol J. David Gladstone Institutes Genomic Core Laboratory SOP
Description Series of 93 B. pseudomallei strains
Data processing GeneData Expressionist
 
Submission date Nov 01, 2007
Last update date Aug 14, 2011
Contact name Sim Siew Hoon
E-mail(s) ssiewhoo@dso.org.sg
Phone 65-64857253
Fax 65-64857262
URL http://www.dso.org.sg
Organization name DSO National Laboratories
Department MCB
Lab Bacteriology
Street address 27 Medical Drive
City Singapore
ZIP/Postal code 117510
Country Singapore
 
Platform ID GPL6073
Series (1)
GSE9491 Comparative genomic analysis of 93 Bp strains using K96243 as the reference

Data table header descriptions
ID_REF
VALUE Normalised log ratios; data normalised using a LOWESS protocol; probes exhibiting a missing value score across >40% of samples and probes whose genomic loci were redundant with other probes were removed.

Data table
ID_REF VALUE
3411402 -0.242134777
3140602 -0.225677925
3140402 -0.053429934
324503 0.108747752
3140302 0.058099862
2843102 -0.315905796
162503 0.000864871
2919502 -0.058159768
2789402 -0.170172293
243703 -0.071303733
2789302 -0.019241532
2789202 -0.13495361
2789102 -0.119045051
2919202 -0.066702921
2919102 0.066867448
185303 -0.022060372
2815602 0.217003521
243803 -0.203345983
3038302 -0.05758344
324603 0.594914932

Total number of rows: 5369

Table truncated, full table size 105 Kbytes.




Supplementary file Size Download File type/resource
GSM240925.gpr.gz 1.4 Mb (ftp)(http) GPR
Processed data included within Sample table

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