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Sample GSM240933 Query DataSets for GSM240933
Status Public on Dec 26, 2008
Title I6 4043-3096vsRef
Sample type genomic
 
Channel 1
Source name Strain: I6 4043-3096
Organism Burkholderia pseudomallei
Characteristics Strain: I6 4043-3096
Extracted molecule genomic DNA
Extraction protocol genomic DNA extraction
Label Cy3
Label protocol Test genomic DNA (2ug) was fluorescently labeled with Cy3-dCTP using nick-translation.
 
Channel 2
Source name Reference: Strain K96243
Organism Burkholderia pseudomallei K96243
Characteristics Strain: K96243
Extracted molecule genomic DNA
Extraction protocol genomic DNA extraction
Label Cy5
Label protocol Reference genomic DNA (2ug) was fluorescently labeled with Cy5-dCTP using nick-translation.
 
 
Hybridization protocol J. David Gladstone Institutes Genomic Core Laboratory SOP
Scan protocol J. David Gladstone Institutes Genomic Core Laboratory SOP
Description Series of 93 B. pseudomallei strains
Data processing GeneData Expressionist
 
Submission date Nov 01, 2007
Last update date Aug 14, 2011
Contact name Sim Siew Hoon
E-mail(s) ssiewhoo@dso.org.sg
Phone 65-64857253
Fax 65-64857262
URL http://www.dso.org.sg
Organization name DSO National Laboratories
Department MCB
Lab Bacteriology
Street address 27 Medical Drive
City Singapore
ZIP/Postal code 117510
Country Singapore
 
Platform ID GPL6073
Series (1)
GSE9491 Comparative genomic analysis of 93 Bp strains using K96243 as the reference

Data table header descriptions
ID_REF
VALUE Normalised log ratios; data normalised using a LOWESS protocol; probes exhibiting a missing value score across >40% of samples and probes whose genomic loci were redundant with other probes were removed.

Data table
ID_REF VALUE
3411402 -0.034787562
3140602 -0.025103337
3140402 0.312933548
324503 0.017969429
3140302 0.244206545
2843102 -0.296550855
162503 0.056211112
2919502 0.00792911
2789402 -0.133439974
243703 1.356056562
2789302 0.03058889
2789202 -0.018325975
2789102 -0.238672514
2919202 0.391787846
2919102 0.225151994
185303 0.057251723
2815602 0.209801794
243803 0.065546942
3038302 -0.171991576
324603 -0.248732697

Total number of rows: 5369

Table truncated, full table size 105 Kbytes.




Supplementary file Size Download File type/resource
GSM240933.gpr.gz 1.4 Mb (ftp)(http) GPR
Processed data included within Sample table

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