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Sample GSM241772 Query DataSets for GSM241772
Status Public on Nov 10, 2007
Title Gene expression in Peyers patches after orogatral Yersinia enterocolitica infection, three days after infection
Sample type RNA
 
Source name Peyers patches
Organism Mus musculus
Characteristics Five C57BL/6 mice were infected for 72 hours with 10 million Yersinia enterocolitica strain WA-314. Pyers patches were isolated, pooled and RNA was isolated
Treatment protocol Standard affymetrix procedure
Extracted molecule total RNA
Extraction protocol Rneasy minikit (Qiagen, Hilden)
Label Affymetrix
Label protocol Affymetrix
 
Hybridization protocol Affymetrix
Scan protocol Affymetrix
Description Affymetrix
Data processing Analysis wit Affymetrix microarray suite 5.0 and Data mining tool 3.0
 
Submission date Nov 08, 2007
Last update date Aug 14, 2011
Contact name Erwin Bohn
E-mail(s) erwin.bohn@med.uni-tuebingen.de
Phone 00-49-70712981525
Fax 00-49-7071294972
Organization name University of Tuebingen
Department Institutefor Medical Microbiology and Hygiene
Street address Elfriede-Aulhorn-Strasse 6
City Tuebingen
ZIP/Postal code 72076
Country Germany
 
Platform ID GPL81
Series (1)
GSE9558 Gene expression analysis of Peyers patches after infection of C57BL/6 mice with Yersinia enterocolitica

Data table header descriptions
ID_REF
VALUE Signal intensity
ABS_CALL Call (Present, Absent, Marginal)
DETECTION P-VALUE p-value of ABS_CALL

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 9.00634 A 0.824672
AFFX-MurIL10_at 12.0653 A 0.470241
AFFX-MurIL4_at 15.2528 A 0.470241
AFFX-MurFAS_at 31.4048 A 0.175328
AFFX-BioB-5_at 203.633 P 0.0166701
AFFX-BioB-M_at 239.871 P 0.000258358
AFFX-BioB-3_at 80.0274 P 0.000445901
AFFX-BioC-5_at 389.286 P 0.000258358
AFFX-BioC-3_at 277.56 P 0.000169227
AFFX-BioDn-5_at 267.551 P 0.000146581
AFFX-BioDn-3_at 2019.83 P 0.000224668
AFFX-CreX-5_at 3349.2 P 4.42873e-05
AFFX-CreX-3_at 6094.84 P 4.42873e-05
AFFX-BioB-5_st 12.6952 A 0.48511
AFFX-BioB-M_st 8.78854 A 0.737173
AFFX-BioB-3_st 10.0621 A 0.883887
AFFX-BioC-5_st 8.94904 A 0.843268
AFFX-BioC-3_st 4.66404 A 0.814869
AFFX-BioDn-5_st 46.8432 A 0.287743
AFFX-BioDn-3_st 16.9421 A 0.396911

Total number of rows: 12488

Table truncated, full table size 361 Kbytes.




Supplementary file Size Download File type/resource
GSM241772.CEL.gz 1.8 Mb (ftp)(http) CEL
GSM241772.CHP.gz 2.0 Mb (ftp)(http) CHP
Processed data included within Sample table

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