|
| Status |
Public on Mar 21, 2020 |
| Title |
Genomic DNA from peripheral blood monoculear cells 5 |
| Sample type |
genomic |
| |
|
| Source name |
Blood
|
| Organism |
Homo sapiens |
| Characteristics |
ethnicity: AA
disease state: Lupus
sledai score: 2
age: 34
|
| Treatment protocol |
NA
|
| Growth protocol |
NA
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Genomic DNA was extracted and purified from normal human kidney tissue samples using Qiagen DNeasy Kit according to standard instructions
|
| Label |
Cy3 and Cy5
|
| Label protocol |
Standard Illumina Protocol
|
| |
|
| Hybridization protocol |
Bisulphite converted DNA was amplified, fragmented and hybridized to Illumina Infinium HumanMethylation450K Beadchip using standard Illumina protocol
|
| Scan protocol |
Arrays were imaged using iScan Reader
|
| Description |
Normal human blood
samples in triplicates
location 1 (triplicate pair 1): 200491250013_R01C01_Grn.idat
location 1 (triplicate pair 1): 200491250013_R01C01_Red.idat
location 2 (triplicate pair 2): 200491250029_R01C01_Grn.idat
location 2 (triplicate pair 2): 200491250029_R01C01_Red.idat
location 3 (triplicate pair 3): 200491250029_R04C01_Grn.idat
location 3 (triplicate pair 3): 200491250029_R04C01_Red.idat
|
| Data processing |
BeadStudio Software
|
| |
|
| Submission date |
Mar 21, 2017 |
| Last update date |
Mar 21, 2020 |
| Contact name |
Stancy Joseph |
| E-mail(s) |
stancy.joseph@fda.hhs.gov
|
| Phone |
8705437502
|
| Organization name |
FDA/NCTR
|
| Department |
Biochemical Toxicology
|
| Street address |
3900 NCTR Road
|
| City |
Jefferson |
| State/province |
Ar |
| ZIP/Postal code |
72079 |
| Country |
USA |
| |
|
| Platform ID |
GPL13534 |
| Series (1) |
| GSE96879 |
Epigenome-Wide Methylation Profile in sustemic lupus erythematosus: Impact of ethnicity and SLEDAI score |
|
