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Sample GSM2545539 Query DataSets for GSM2545539
Status Public on Mar 21, 2020
Title Genomic DNA from peripheral blood monoculear cells 132
Sample type genomic
 
Source name Blood
Organism Homo sapiens
Characteristics ethnicity: EA
disease state: Lupus
sledai score: 2
age: 60
Treatment protocol NA
Growth protocol NA
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted and purified from normal human kidney tissue samples using Qiagen DNeasy Kit according to standard instructions
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
 
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridized to Illumina Infinium HumanMethylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using iScan Reader
Description Normal human blood
samples in triplicates
location 1 (triplicate pair 1): 3998419077_R05C01_Grn.idat
location 1 (triplicate pair 1): 3998419077_R05C01_Red.idat
location 2 (triplicate pair 2): 3998419096_R05C01_Grn.idat
location 2 (triplicate pair 2): 3998419096_R05C01_Red.idat
location 3 (triplicate pair 3): 3998419096_R05C02_Grn.idat
location 3 (triplicate pair 3): 3998419096_R05C02_Red.idat
Data processing BeadStudio Software
 
Submission date Mar 21, 2017
Last update date Mar 21, 2020
Contact name Stancy Joseph
E-mail(s) stancy.joseph@fda.hhs.gov
Phone 8705437502
Organization name FDA/NCTR
Department Biochemical Toxicology
Street address 3900 NCTR Road
City Jefferson
State/province Ar
ZIP/Postal code 72079
Country USA
 
Platform ID GPL13534
Series (1)
GSE96879 Epigenome-Wide Methylation Profile in sustemic lupus erythematosus: Impact of ethnicity and SLEDAI score

Data table header descriptions
ID_REF
VALUE Average Beta

Data table
ID_REF VALUE
cg00000029 0.483694171
cg00000108 0.99080693
cg00000109 0.922520039
cg00000165 0.157657928
cg00000236 0.754581378
cg00000289 0.718792218
cg00000292 0.872541131
cg00000321 0.359294995
cg00000363 0.459196459
cg00000622 0.034930048
cg00000658 0.841853483
cg00000714 0.13834536
cg00000721 0.972525601
cg00000734 0.045793646
cg00000769 0.087415314
cg00000807 0.9180011
cg00000884 0.898814329
cg00000905 0.021374004
cg00000924 0.550023976
cg00000948 0.920119114

Total number of rows: 483029

Table truncated, full table size 10806 Kbytes.




Supplementary file Size Download File type/resource
GSM2545539_3998419077_R05C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM2545539_3998419077_R05C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM2545539_3998419096_R05C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM2545539_3998419096_R05C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM2545539_3998419096_R05C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM2545539_3998419096_R05C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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