|
| Status |
Public on Feb 25, 2008 |
| Title |
endogenous small RNAs from Arabidopsis thaliana col-0, wild type, flower buds |
| Sample type |
RNA |
| |
|
| Source name |
Arabidopsis thaliana col-0 wild type flower buds
|
| Organism |
Arabidopsis thaliana |
| Characteristics |
flower buds from plants grown under 16h light
|
| Growth protocol |
Plants were grown under 16h light.
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Total RNA was extracted and further purifed on polyacrylamide gels.
|
| Label |
none
|
| Label protocol |
none
|
| |
|
| Hybridization protocol |
none
|
| Scan protocol |
none
|
| Description |
Total endogenous small RNAs from Arabidopsis thaliana col-0 wild type
|
| Data processing |
Small RNA sequences that did not match tRNA or rRNA sequences (obtained from RFAM; www.sanger.ac.uk/Software/Rfam) were mapped to the Arabidopsis thaliana genome (TAIR6, www.arabidopsis.org). Only full-length complete matches were allowed. Only sequences that had at least one match to the genome are contained in the table.
|
| |
|
| Submission date |
Jan 15, 2008 |
| Last update date |
Feb 25, 2008 |
| Contact name |
Frank Schwach |
| E-mail(s) |
f.schwach@uea.ac.uk
|
| Organization name |
University of East Anglia
|
| Department |
School of Computing Sciences
|
| Lab |
Computational Biology Group
|
| Street address |
University of East Anglia
|
| City |
Norwich |
| ZIP/Postal code |
NR4 7UH |
| Country |
United Kingdom |
| |
|
| Platform ID |
GPL6375 |
| Series (1) |
| GSE10180 |
High-throughput pyrosequencing of endogenous small RNAs from Arabidopsis thaliana wild-type and polIV mutants |
|
