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Sample GSM27056 Query DataSets for GSM27056
Status Public on Jul 30, 2004
Title Ago2 IP Experiment 2 Replicate 1
Sample type RNA
 
Channel 1
Source name Reference oligonucleotide set
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name Labeled microRNA
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description 293 cells were tranfected with Myc-tagged argonaute family members and associated microRNAs quantitated by microarray analysis of immunoprecipitates. Human argonaute 1, 2, and 3, and a control immunoprecipitation were done. Two independent immunoprecipitations were performed, with two replicate points per immunoprecipitation. Ch1and Ch2 net values are median intensity, background subtracted, unnormalized. Normalized Ch2 values for argonaute immunoprecipitations are median center normalized. Normalized Ch2 values for control immunoprecipitates are normalized by a constant that is the average of the constants used for argonaute immunoprecipitates.
Keywords = microRNA
Keywords = miRNA
Keywords = argonaute
 
Submission date Jul 20, 2004
Last update date May 27, 2005
Contact name Scott M Hammond
E-mail(s) hammond@med.unc.edu
Phone 919-843-2366
Fax 919-966-1856
Organization name University of North Carolina
Department Dept Cell and Developmental Biology
Street address
City Chapel Hill
State/province NC
ZIP/Postal code 27599
Country USA
 
Platform ID GPL1351
Series (1)
GSE1573 MicroRNA profiles of RISC sub-complexes

Data table header descriptions
ID_REF
VALUE Median Centered Normalized Log Ratio Values CH2/CH1
CH1_NET Background subtracted CH1 (635) Median Intensity
CH2_NET Background subtracted CH2 (532) Median Intensity
CH2_NORMALIZED NET
FLAG Denotes which features met our filtering criterion. A negative value means that the CH1_NET and CH2_NORMALIZED_NET were both below 1.5 Times Background

Data table
ID_REF VALUE CH1_NET CH2_NET CH2_NORMALIZED NET FLAG
1 1.606028954 1095 998 3333.32 0
2 -2.012942459 1375 102 340.68 0
3 0.914056566 1831 1033 3450.22 0
4 2.920420348 555 1258 4201.72 0
5 2.758339381 4535 9187 30684.58 0
6 -2.757338438 271 12 40.08 0
7 2.321818731 9815 14692 49071.28 0
8 0.823791561 2704 1433 4786.22 0
9 2.568357507 2766 4912 16406.08 0
10 1.169121607 958 645 2154.3 0
11 -4.259346597 1791 28 93.52 0
12 -2.058108121 1377 99 330.66 0
13 0.266341299 1133 408 1362.72 0
14 -0.631456787 1278 247 824.98 0
15 -0.58444313 611 122 407.48 0
16 -0.58444313 611 122 407.48 0
17 -3.364022495 619 18 60.12 0
18 -2.061432305 1896 136 454.24 0
19 -2.300566166 1810 110 367.4 0
20 -2.861863552 3812 157 524.38 0

Total number of rows: 156

Table truncated, full table size 5 Kbytes.




Supplementary data files not provided

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