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Sample GSM277646 Query DataSets for GSM277646
Status Public on Dec 22, 2008
Title Synchronous liver metastasis colorectal CA 18
Sample type RNA
 
Source name Synchronous liver metastasis from colorectal cancer_sample S18
Organism Homo sapiens
Characteristics Tissue: liver metastasis; Tumor: colorectal carcinoma. Status: Synchronous metastasis
Biomaterial provider Prof. Guido Biasco. Institute of Hematology and Medical Oncology "L. & A. Seragnoli", Bologna, Italy.
Extracted molecule total RNA
Extraction protocol Trizol reagent on frozen, pulverized tissue specimen
Label biotin
Label protocol Affymetrix one-cycle labeling protocol (Expression_analysis_technical_manual)
 
Hybridization protocol According to Affymetrix Expression_analysis_technical_manual
Scan protocol Affymetrix scanner 7G. GCOS 1.4 acquisition software
Description null
Data processing MAS5.0 Signal and Detection algorithm. Scaling to 500.
 
Submission date Mar 27, 2008
Last update date Aug 28, 2018
Contact name Maria Abbondanza Pantaleo
E-mail(s) maria.pantaleo@unibo.it
Organization name Policlinico S. Orsola-Malpighi, University of Bologna
Department Institute of Hematology and Medical Oncology "L.A.Seragnoli"
Street address via Massarenti 9
City Bologna
State/province BO
ZIP/Postal code 40138
Country Italy
 
Platform ID GPL570
Series (1)
GSE10961 Gene expression profiling of liver metastases from colorectal cancer
Relations
Reanalyzed by GSE119087

Data table header descriptions
ID_REF
VALUE Signal, scaled to 500
ABS_CALL Detection
DETECTION P-VALUE P value of detection

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 1240.2 P 0.000340305
AFFX-BioB-M_at 2368.29 P 4.42873e-05
AFFX-BioB-3_at 1327.47 P 7.00668e-05
AFFX-BioC-5_at 3219.13 P 5.16732e-05
AFFX-BioC-3_at 6193.45 P 4.42873e-05
AFFX-BioDn-5_at 11992.4 P 4.42873e-05
AFFX-BioDn-3_at 20409.7 P 4.42873e-05
AFFX-CreX-5_at 54873.6 P 5.16732e-05
AFFX-CreX-3_at 66087.7 P 4.42873e-05
AFFX-DapX-5_at 698.961 P 6.02111e-05
AFFX-DapX-M_at 2424.41 P 0.000753643
AFFX-DapX-3_at 4123.32 P 4.42873e-05
AFFX-LysX-5_at 136.805 P 0.00110197
AFFX-LysX-M_at 338.958 P 0.0113844
AFFX-LysX-3_at 835.289 P 4.42873e-05
AFFX-PheX-5_at 168.692 P 0.000224668
AFFX-PheX-M_at 365.395 P 0.000662269
AFFX-PheX-3_at 499.949 P 9.4506e-05
AFFX-ThrX-5_at 102.22 P 0.0261008
AFFX-ThrX-M_at 464.96 P 0.0020226

Total number of rows: 54675

Table truncated, full table size 1628 Kbytes.




Supplementary file Size Download File type/resource
GSM277646.CEL.gz 7.8 Mb (ftp)(http) CEL
GSM277646.CHP.gz 12.9 Mb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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