|
| Status |
Public on Feb 13, 2018 |
| Title |
WT rep2 |
| Sample type |
SRA |
| |
|
| Source name |
Lumbar spinal cord
|
| Organism |
Mus musculus |
| Characteristics |
background strain: FVB
tissue: Lumbar spinal cord
age: post natal day 95
genotype: wild type
|
| Treatment protocol |
Total RNA was extracted from fresh forzen spinal cord using Trizol reagent.
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA libraries were prepared for sequencing using standard protocols
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 4000 |
| |
|
| Data processing |
Libraries of template molecules suitable for high throughput DNA sequencing were created and reads were mapped onto mm10 assembly of mouse genome using Tophat v2.0.14.
Quantification of gene expression was performed using HTSeq v0.6.1 and Ensembl release 81 database.
Genome_build: mm10
Supplementary_files_format_and_content: tab-delimited text files include RPKM values for each Sample ...
|
| |
|
| Submission date |
Oct 31, 2017 |
| Last update date |
May 15, 2019 |
| Contact name |
Alexandre Henriques |
| E-mail(s) |
henriques.a@gmx.com
|
| Organization name |
Spedding Research Solutions, SAS
|
| Street address |
At U1118, 11 rue Humann
|
| City |
Strasbourg |
| ZIP/Postal code |
67085 |
| Country |
France |
| |
|
| Platform ID |
GPL21103 |
| Series (1) |
| GSE106364 |
Transcriptomic signature of spinal cord from SOD1 G86R mice |
|
| Relations |
| BioSample |
SAMN07958169 |
| SRA |
SRX3345446 |
