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| Status |
Public on Nov 08, 2017 |
| Title |
CTCL early stage, biological rep 1_agilent |
| Sample type |
RNA |
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| Source name |
CTCL early stage, biological rep 1
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| Organism |
Homo sapiens |
| Characteristics |
tissue: skin
diagnosis: Cutaneous T cell lymphoma (CTCL)
number of patients: 5
number of male patients: 2
number of female patients: 3
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| Extracted molecule |
total RNA |
| Extraction protocol |
Trizol extraction of total RNA was performed according to the manufacturer's instructions.
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| Label |
cy3
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| Label protocol |
This step was performed in core facility of Oebiotech; Address: 1505 Zuchongzhi Rd, Blk 138, Floor 6, Shanghai, China. Tel: 86-21-38762096
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| Hybridization protocol |
This step was performed in core facility of Oebiotech; Address: 1505 Zuchongzhi Rd, Blk 138, Floor 6, Shanghai, China. Tel: 86-21-38762096
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| Scan protocol |
This step was performed in core facility of Oebiotech; Address: 1505 Zuchongzhi Rd, Blk 138, Floor 6, Shanghai, China. Tel: 86-21-38762096
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| Description |
miRNA
CTCL_E_1
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| Data processing |
This step was performed in core facility of Oebiotech; Address: 1505 Zuchongzhi Rd, Blk 138, Floor 6, Shanghai, China. Tel: 86-21-38762096
Normalization was done separately for rep 1 and rep 2 samples due to limited number of patients recruited to study during the course of the study. The ID_REF column contains a mixture of miRNA ID and probe name. These IDs can be found in the raw data files in the columns "SystematicName" and "ProbeName", respectively. This step was performed in core facility of Oebiotech; Address: 1505 Zuchongzhi Rd, Blk 138, Floor 6, Shanghai, China. Tel: 86-21-38762096. The normalized data are available on the series record. The normalization method was not available at the time of data submission.
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| Submission date |
Nov 07, 2017 |
| Last update date |
Jan 23, 2018 |
| Contact name |
Jie Zheng |
| E-mail(s) |
bowang_shcn@hotmail.com
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| Organization name |
Ruijin Hospital
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| Department |
Dermatology
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| Street address |
197 Ruijin Er Rd
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| City |
Shanghai |
| ZIP/Postal code |
200025 |
| Country |
China |
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| Platform ID |
GPL18509 |
| Series (2) |
| GSE106645 |
Expression data from CTCL patient skin lesion [Agilent] |
| GSE106646 |
Expression data from CTCL patient skin lesion |
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| Supplementary file |
Size |
Download |
File type/resource |
| GSM2844424_E_1.txt.gz |
900.2 Kb |
(ftp)(http) |
TXT |
| Processed data are available on Series record |
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