|
| Status |
Public on Apr 23, 2019 |
| Title |
MBC-15 |
| Sample type |
genomic |
| |
|
| Source name |
primary tumor
|
| Organism |
Homo sapiens |
| Characteristics |
tissue: breast tumor
|
| Growth protocol |
primary formalin fixed parafffin embedded tissue
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
genomic DANN was extracted from macrodissected with DNAeasy blood and tissue kit (Qiagen)
|
| Label |
biotin
|
| Label protocol |
as given by the manufacturer (Affymetrix)
|
| |
|
| Hybridization protocol |
DNA was restriction digested, PCR amplified, fragmented, labeled and hybridized to each array according to the manufacturer's instructions.
|
| Scan protocol |
The Arrays were then washed using Affymetrix fluidics stations, and scanned using the Gene Chip Scanner 3000 7G.
|
| Description |
hybridized to [OncoScan] Affymetrix OncoScan array
|
| Data processing |
CEL files were generated after scanning by the Affymetrix GeneChip Command Console (AGCC). These CEL files were further processed using OncoScan Console software version 1.3.0.39 to produce OSCHP files.
|
| |
|
| Submission date |
Nov 27, 2017 |
| Last update date |
Apr 23, 2019 |
| Contact name |
Doris Steinemann |
| E-mail(s) |
steinemann.doris@mh-hannover.de
|
| Organization name |
Medizinische Hochschule Hannover
|
| Department |
Human Genetics
|
| Street address |
Carl-Neuberg-Straße 1
|
| City |
Hannover |
| ZIP/Postal code |
30625 |
| Country |
Germany |
| |
|
| Platform ID |
GPL18602 |
| Series (1) |
| GSE107394 |
Genomic aberrations in metaplastic breast carcinomas and adenomyoepitheliomas |
|
