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GEO accession:
Sample GSM286605
Query DataSets for GSM286605
Status
Public on Jun 02, 2008
Title
2-6hr embryo
Sample type
SRA
Source name
Drosophila melanogaster 2-6hr embryo
Organism
Drosophila melanogaster
Characteristics
Drosophila melanogaster 2-6hr embryo
Extracted molecule
total RNA
Extraction protocol
total RNA from 2-6hr embryo, ~18-26nt RNAs isolated using PAGE, ligation to adapters requires 5' monophosphate and 3' OH
Library strategy
OTHER
Library source
transcriptomic
Library selection
other
Instrument model
Illumina Genome Analyzer
Description
small RNAs
Data processing
raw sequences were clipped by 3' linker sequences recognition, and select clipped sequences longer than 18 nt
Submission date
May 05, 2008
Last update date
Jun 11, 2013
Contact name
Wei-Jen Chung
Phone
212-6395549
Organization name
Sloan-Kettering Institute
Department
Developmental Biology
Lab
Lai
Street address
430 E 67th St
City
New York
State/province
NY
ZIP/Postal code
10021
Country
USA
Platform ID
GPL9058
Series (1)
GSE11624
Drosophila melanogaster small RNA sequence from 14 libraries
Relations
BioSample
SAMN02195286
Data table header descriptions
SEQUENCE
small RNA sequence
COUNT
number of times small RNA was sequenced
Data table
SEQUENCE
COUNT
GGAGTTTATAAATTGGGTGAACCTCGCTCTAGTAAA
1
TCCACAACGATGGAAGATGATGA
4
CCAGGGCTAGCCCAAGATGTTGCT
1
AATAGATGGGAAAAGCACTTGAG
1
CCTTCCAAGTGGGAGACAAATGC
1
TGAGAGTGCTGCACTGCCATTTTTC
2
TTGCAGCCACTCTGGTCCGTGCCAC
4
TGGCGAAGTTTCCCTAGGGTGAAAG
3
TTATTGAAATCAGGGTATGGGATC
2
AGGCTCATTGGTTGCTTGCGGTGA
1
TCTTCGGTTTAAATAGGTGACATTCTTT
2
TGGCTATATGCGTCAGTCACGGACTCT
1
TATTATGAGAATAGTGTGCATTTT
8
ATAGAGCAAAAGGGCAAATGCTGA
3
TTGAGCTGTGGTGCACCTCCG
1
AGAGCCTCGCTCTTGGGTTCTTAAGAT
35
TAAGTTAAGTTTTTATTGTGTTTC
1
TATTCTGTAACAATAATAAATTTTC
1
TAAGTTCCACCAGGTGTCAATGATC
1
AAGGGTGATCAGGACGGCACCGGTGGGGAGC
1
Total number of rows:
1187690
Table truncated, full table size
33157 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM286605.txt.gz
64.5 Mb
(ftp)
(http)
TXT
Raw data provided as supplementary file
Processed data included within Sample table
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