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Series GSE11624 Query DataSets for GSE11624
Status Public on Jun 02, 2008
Title Drosophila melanogaster small RNA sequence from 14 libraries
Organism Drosophila melanogaster
Experiment type Non-coding RNA profiling by high throughput sequencing
Summary High-throughput sequencing of Drosophila melanogaster small RNAs.
total RNA, ~18-26nt RNAs isolated using PAGE, ligation to adapters requires 5' monophosphate and 3' OH
Overall design Small RNAs were sequenced from D. melanogaster heads (male and female), body (male and female), S2 and Kc cells and different stages of embryo. Raw sequences were clipped by 3' linker sequences recognition, and select clipped sequences longer than 18 nt
Contributor(s) Lai EC
Citation(s) 18501606
Submission date May 30, 2008
Last update date May 15, 2019
Contact name Wei-Jen Chung
Phone 212-6395549
Organization name Sloan-Kettering Institute
Department Developmental Biology
Lab Lai
Street address 430 E 67th St
City New York
State/province NY
ZIP/Postal code 10021
Country USA
Platforms (1)
GPL9058 Illumina Genome Analyzer (Drosophila melanogaster)
Samples (14)
GSM240749 Female heads
GSM272651 S2 and KC cells
GSM272652 Drosophila melanogaster S2-GMR, first biological replicate
SRA SRP003879
BioProject PRJNA106137
SRA SRP003801
SRA SRP003876

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE11624_RAW.tar 176.8 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data included within Sample table

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